Variant report

Variant	rs11171913
Chromosome Location	chr12:57025167-57025168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:56497194..56499592-chr12:57025012..57027087,2	MCF-7	breast:
2	chr12:56996744..56998793-chr12:57023200..57025186,2	MCF-7	breast:
3	chr12:56861539..56863714-chr12:57023540..57025612,3	MCF-7	breast:
4	chr12:57022951..57032187-chr12:57113330..57121462,17	K562	blood:
5	chr12:57024284..57028695-chr12:57112563..57115410,4	K562	blood:
6	chr12:57022393..57025472-chr12:57080099..57082971,5	MCF-7	breast:
7	chr12:57022927..57025378-chr12:57037788..57040266,3	K562	blood:
8	chr12:57022951..57026800-chr12:57117756..57120478,4	K562	blood:
9	chr12:57023932..57026516-chr12:57081163..57083127,2	MCF-7	breast:
10	chr12:57010005..57012841-chr12:57024813..57028519,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170515	Chromatin interaction
ENSG00000207031	Chromatin interaction
ENSG00000176422	Chromatin interaction
ENSG00000110958	Chromatin interaction
ENSG00000196531	Chromatin interaction
ENSG00000110955	Chromatin interaction
ENSG00000076108	Chromatin interaction
ENSG00000135517	Chromatin interaction

rs_ID	r²[population]
rs10219697	1.00[EUR][1000 genomes]
rs11171906	1.00[EUR][1000 genomes]
rs11171912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11171939	1.00[EUR][1000 genomes]
rs11472	1.00[EUR][1000 genomes]
rs12306723	1.00[EUR][1000 genomes]
rs12308290	1.00[EUR][1000 genomes]
rs12313811	1.00[EUR][1000 genomes]
rs12318580	1.00[EUR][1000 genomes]
rs12321709	1.00[EUR][1000 genomes]
rs2230580	1.00[EUR][1000 genomes]
rs60055969	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335264	1.00[EUR][1000 genomes]
rs73335265	1.00[EUR][1000 genomes]
rs73335300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57024000-57026000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:57024000-57028000	Enhancers	Stomach Mucosa	stomach
3	chr12:57024200-57027600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr12:57024200-57027800	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr12:57024400-57025400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:57024400-57025600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:57024400-57025800	Enhancers	Primary hematopoietic stem cells	blood
8	chr12:57024400-57026000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:57024400-57026000	Enhancers	Fetal Intestine Large	intestine
10	chr12:57024400-57026000	Enhancers	Left Ventricle	heart
11	chr12:57024400-57026000	Weak transcription	HSMM	muscle
12	chr12:57024400-57026200	Weak transcription	Aorta	Aorta
13	chr12:57024400-57026200	Enhancers	Pancreas	Pancrea
14	chr12:57024400-57026400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:57024400-57026800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr12:57024400-57026800	Enhancers	Fetal Muscle Trunk	muscle
17	chr12:57024400-57027400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:57024400-57027800	Enhancers	Fetal Muscle Leg	muscle
19	chr12:57024400-57027800	Enhancers	Placenta	Placenta
20	chr12:57024400-57028000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:57024400-57028000	Enhancers	Small Intestine	intestine
22	chr12:57024400-57028000	Enhancers	Spleen	Spleen
23	chr12:57024600-57025400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr12:57024600-57025400	Enhancers	Thymus	Thymus
25	chr12:57024600-57025600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:57024600-57025600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr12:57024600-57025600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr12:57024600-57025600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr12:57024600-57025600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr12:57024600-57025600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr12:57024600-57025600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr12:57024600-57025600	Weak transcription	Esophagus	oesophagus
33	chr12:57024600-57025600	Weak transcription	Fetal Brain Female	brain
34	chr12:57024600-57025600	Weak transcription	Ovary	ovary
35	chr12:57024600-57025600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr12:57024600-57025600	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr12:57024600-57025800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr12:57024600-57025800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr12:57024600-57025800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr12:57024600-57025800	Weak transcription	Fetal Kidney	kidney
41	chr12:57024600-57026000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr12:57024600-57026000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:57024600-57026000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr12:57024600-57026000	Enhancers	Primary B cells from peripheral blood	blood
45	chr12:57024600-57026000	Enhancers	Brain Germinal Matrix	brain
46	chr12:57024600-57026000	Enhancers	HMEC	breast
47	chr12:57024600-57026200	Enhancers	Primary T cells fromperipheralblood	blood
48	chr12:57024600-57026200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr12:57024600-57026200	Enhancers	Liver	Liver
50	chr12:57024600-57026400	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links