Variant report

Variant	rs60055969
Chromosome Location	chr12:57029391-57029392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:57026160..57032326-chr12:57079667..57084551,17	K562	blood:
2	chr12:56726222..56728684-chr12:57029167..57031416,2	K562	blood:
3	chr12:56519055..56522038-chr12:57029162..57030731,2	K562	blood:
4	chr12:56861952..56864525-chr12:57027360..57030112,3	MCF-7	breast:
5	chr12:57003620..57005950-chr12:57028617..57030192,2	MCF-7	breast:
6	chr12:56991516..56994347-chr12:57026603..57029452,2	MCF-7	breast:
7	chr12:56708298..56710997-chr12:57029134..57031889,3	MCF-7	breast:
8	chr12:57027161..57032164-chr12:57080546..57084524,13	MCF-7	breast:
9	chr12:57026546..57029544-chr16:67232971..67234714,2	MCF-7	breast:
10	chr12:56992973..56997884-chr12:57027374..57031905,8	K562	blood:
11	chr12:57026457..57031197-chr12:57479410..57483153,5	MCF-7	breast:
12	chr12:56988198..56989762-chr12:57027319..57029681,2	MCF-7	breast:
13	chr12:57027023..57035553-chr12:57079936..57085201,18	MCF-7	breast:
14	chr12:57028651..57034442-chr12:57080412..57084452,17	K562	blood:
15	chr12:56551730..56554656-chr12:57027945..57032236,3	K562	blood:
16	chr12:57028665..57030374-chr12:57480509..57482064,2	K562	blood:
17	chr12:57022951..57032187-chr12:57113330..57121462,17	K562	blood:
18	chr12:56753830..56756625-chr12:57028420..57030715,2	MCF-7	breast:
19	chr12:57026992..57029615-chr12:57053827..57055942,3	MCF-7	breast:
20	chr12:56435340..56437359-chr12:57026974..57029563,2	K562	blood:
21	chr12:57029325..57031901-chr12:57117186..57120147,2	K562	blood:
22	chr12:57028905..57032364-chr12:57143305..57146712,4	K562	blood:
23	chr12:56435192..56437359-chr12:57027578..57029563,2	K562	blood:
24	chr12:56997043..57002825-chr12:57025405..57031317,7	MCF-7	breast:
25	chr12:57029377..57029877-chr16:820676..821222,2	NB4	blood:
26	chr12:57026523..57033046-chr12:57115223..57120839,17	MCF-7	breast:
27	chr12:56993930..56997262-chr12:57028560..57031023,3	K562	blood:
28	chr12:57028511..57031502-chr12:57144814..57146323,2	MCF-7	breast:
29	chr12:57028481..57030405-chr12:57144099..57146089,2	K562	blood:
30	chr12:56988299..56991768-chr12:57027062..57029523,3	MCF-7	breast:
31	chr12:56987817..56988441-chr12:57028533..57029434,2	MCF-7	breast:
32	chr12:57026854..57029446-chr12:57913770..57915421,2	MCF-7	breast:
33	chr12:57029241..57032243-chr12:57118930..57120997,3	MCF-7	breast:
34	chr12:57007109..57010688-chr12:57028709..57032558,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166886	Chromatin interaction
ENSG00000197728	Chromatin interaction
ENSG00000139641	Chromatin interaction
ENSG00000110958	Chromatin interaction
ENSG00000076108	Chromatin interaction
ENSG00000170581	Chromatin interaction
ENSG00000166881	Chromatin interaction
ENSG00000166987	Chromatin interaction
ENSG00000257449	Chromatin interaction
ENSG00000257809	Chromatin interaction
ENSG00000175197	Chromatin interaction
ENSG00000135473	Chromatin interaction
ENSG00000198056	Chromatin interaction
ENSG00000257727	Chromatin interaction
ENSG00000092841	Chromatin interaction
ENSG00000144785	Chromatin interaction
ENSG00000102890	Chromatin interaction
ENSG00000135517	Chromatin interaction
ENSG00000196531	Chromatin interaction
ENSG00000176422	Chromatin interaction
ENSG00000175336	Chromatin interaction
ENSG00000025423	Chromatin interaction

rs_ID	r²[population]
rs11171912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11171913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57025400-57030600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
2	chr12:57025400-57031400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:57026400-57030600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr12:57026400-57030800	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr12:57026600-57031200	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr12:57027200-57031200	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr12:57027400-57029800	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr12:57027600-57030200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:57027600-57030400	Active TSS	NHDF-Ad	bronchial
10	chr12:57027600-57030600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr12:57027600-57030800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:57027600-57030800	Active TSS	Thymus	Thymus
13	chr12:57027600-57031000	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr12:57027800-57029800	Active TSS	H1 Cell Line	embryonic stem cell
15	chr12:57027800-57030000	Flanking Active TSS	Colonic Mucosa	Colon
16	chr12:57027800-57030000	Active TSS	Fetal Kidney	kidney
17	chr12:57027800-57030200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:57027800-57030200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr12:57027800-57030200	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr12:57027800-57030400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr12:57027800-57030400	Active TSS	Ovary	ovary
22	chr12:57027800-57030600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr12:57027800-57030600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr12:57027800-57030600	Active TSS	Esophagus	oesophagus
25	chr12:57027800-57030600	Active TSS	Gastric	stomach
26	chr12:57027800-57030600	Active TSS	Placenta Amnion	Placenta Amnion
27	chr12:57027800-57030800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr12:57027800-57030800	Flanking Active TSS	Dnd41	blood
29	chr12:57028000-57029800	Active TSS	HMEC	breast
30	chr12:57028000-57030200	Active TSS	Lung	lung
31	chr12:57028000-57030200	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr12:57028000-57030400	Active TSS	NHLF	lung
33	chr12:57028000-57030600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:57028000-57030600	Active TSS	Aorta	Aorta
35	chr12:57028200-57029600	Active TSS	Muscle Satellite Cultured Cells	--
36	chr12:57028200-57029800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr12:57028200-57030200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr12:57028200-57030200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr12:57028200-57030400	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr12:57028200-57030400	Active TSS	Small Intestine	intestine
41	chr12:57028200-57030600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr12:57028200-57030600	Active TSS	Left Ventricle	heart
43	chr12:57028200-57030600	Active TSS	Psoas Muscle	Psoas
44	chr12:57028200-57031000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr12:57028400-57029400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
46	chr12:57028400-57029400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr12:57028400-57029400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:57028400-57029800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr12:57028400-57030400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr12:57028400-57030600	Active TSS	Colon Smooth Muscle	Colon

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