Variant report
| Variant | rs10223956 |
|---|---|
| Chromosome Location | chr7:19256239-19256240 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10248905 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10248909 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10264031 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10265691 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10268652 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11762525 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13231579 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13246260 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1557771 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs16872209 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17352178 | 0.92[EUR][1000 genomes] |
| rs17436684 | 0.89[EUR][1000 genomes] |
| rs17436733 | 0.92[EUR][1000 genomes] |
| rs56009802 | 0.81[EUR][1000 genomes] |
| rs56765814 | 0.94[EUR][1000 genomes] |
| rs6461407 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6958430 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs71524281 | 0.86[EUR][1000 genomes] |
| rs71524282 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7786454 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7787452 | 0.90[EUR][1000 genomes] |
| rs7791171 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531020 | chr7:18971153-19261019 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv532096 | chr7:19094324-19361216 | Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv532097 | chr7:19105767-19302951 | Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1022118 | chr7:19178075-19518160 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:19254000-19256400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
