Variant report

Variant	rs13231579
Chromosome Location	chr1:87533038-87533039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10223956	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10248905	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10248909	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10264031	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10265691	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13246260	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1557771	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16872209	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56009802	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6461406	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6461407	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6945560	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6958430	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:87515400-87562800	Weak transcription	Primary T cells from cord blood	blood
2	chr1:87528000-87543000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:87528200-87546000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:87529800-87564400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:87529800-87565800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:87531000-87541800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:87531000-87542200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:87531200-87538800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:87531200-87569600	Weak transcription	Pancreas	Pancrea
10	chr1:87531400-87533400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:87531400-87539600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:87531400-87553200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:87531800-87564800	Weak transcription	Fetal Intestine Large	intestine
14	chr1:87532200-87534200	Weak transcription	Primary B cells from cord blood	blood
15	chr1:87532200-87543600	Weak transcription	GM12878-XiMat	blood
16	chr1:87533000-87565000	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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