Variant report

Variant	rs10224232
Chromosome Location	chr7:140180271-140180272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140176812..140180644-chr7:140393947..140398398,4	K562	blood:
2	chr7:139760670..139762884-chr7:140178073..140180883,2	K562	blood:
3	chr7:140173004..140174685-chr7:140179512..140182205,2	MCF-7	breast:
4	chr7:140096834..140099391-chr7:140178947..140180902,2	K562	blood:

Variant related genes	Relation type
ENSG00000090266	Chromatin interaction
ENSG00000157800	Chromatin interaction
ENSG00000240889	Chromatin interaction
ENSG00000059378	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10257086	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10265395	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246753	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28648799	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756184	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34139784	0.88[EUR][1000 genomes]
rs7811221	0.85[ASN][1000 genomes]
rs7811509	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140179800-140181000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:140179800-140181200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:140179800-140181200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:140179800-140183000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:140179800-140183400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:140179800-140183400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:140179800-140184400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:140179800-140184600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:140179800-140184800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:140179800-140185200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:140179800-140187800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:140179800-140198000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:140180000-140180600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:140180000-140181200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:140180000-140183200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:140180000-140183200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:140180000-140183200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:140180000-140183400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:140180000-140184400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:140180000-140184400	Weak transcription	Fetal Intestine Large	intestine
21	chr7:140180000-140184400	Weak transcription	Fetal Intestine Small	intestine
22	chr7:140180000-140184400	Weak transcription	Hela-S3	cervix
23	chr7:140180000-140184400	Weak transcription	K562	blood
24	chr7:140180000-140184600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:140180000-140184600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:140180000-140184600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:140180000-140184800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:140180000-140184800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:140180000-140184800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:140180000-140185200	Weak transcription	NHEK	skin
31	chr7:140180000-140188200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links