Variant report

Variant	rs7811221
Chromosome Location	chr7:140171076-140171077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140170487..140172343-chr7:140174388..140176536,2	K562	blood:
2	chr7:140170034..140173996-chr7:140176770..140179356,4	K562	blood:
3	chr7:140164526..140166451-chr7:140169197..140172193,2	K562	blood:
4	chr7:140170755..140172962-chr7:140174388..140176743,3	K562	blood:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10224232	0.85[ASN][1000 genomes]
rs10241951	1.00[EUR][1000 genomes]
rs10256074	1.00[EUR][1000 genomes]
rs10265395	0.85[ASN][1000 genomes]
rs10266321	1.00[EUR][1000 genomes]
rs10274673	1.00[EUR][1000 genomes]
rs1610271	1.00[EUR][1000 genomes]
rs28648799	0.85[ASN][1000 genomes]
rs28756184	0.85[ASN][1000 genomes]
rs6967008	1.00[EUR][1000 genomes]
rs6971596	1.00[EUR][1000 genomes]
rs73485136	1.00[EUR][1000 genomes]
rs7799539	1.00[EUR][1000 genomes]
rs7811509	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140150800-140171800	Strong transcription	Fetal Thymus	thymus
3	chr7:140151000-140171600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:140151000-140171600	Strong transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:140151000-140173400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:140151200-140171600	Strong transcription	Adipose Nuclei	Adipose
7	chr7:140151200-140172200	Strong transcription	Fetal Stomach	stomach
8	chr7:140151400-140171800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr7:140151400-140172200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:140151600-140172200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:140151800-140172200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:140151800-140176600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:140152200-140171400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr7:140152200-140172000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr7:140152200-140172000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:140152200-140172000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:140152200-140172200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr7:140152400-140171600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:140152400-140171600	Strong transcription	Stomach Smooth Muscle	stomach
20	chr7:140152400-140171800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:140152400-140172200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:140152600-140171800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:140152600-140171800	Strong transcription	K562	blood
24	chr7:140152600-140172200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:140152800-140171600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:140153200-140171800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:140153800-140172200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr7:140155600-140175200	Weak transcription	Fetal Brain Male	brain
29	chr7:140156600-140171400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:140156800-140172600	Strong transcription	Fetal Intestine Large	intestine
31	chr7:140156800-140175800	Weak transcription	Fetal Heart	heart
32	chr7:140156800-140175800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr7:140156800-140177400	Weak transcription	HUVEC	blood vessel
34	chr7:140156800-140177600	Weak transcription	HSMMtube	muscle
35	chr7:140156800-140178000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:140157000-140177600	Weak transcription	NH-A	brain
37	chr7:140157400-140171600	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:140157400-140172000	Strong transcription	Liver	Liver
39	chr7:140157400-140172000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr7:140158400-140172000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:140158800-140172000	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:140158800-140173400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:140159000-140171200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:140159000-140171600	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr7:140159000-140172000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:140159400-140172000	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:140159400-140177400	Weak transcription	HSMM	muscle
48	chr7:140159800-140175400	Strong transcription	Fetal Intestine Small	intestine
49	chr7:140160200-140172200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:140160400-140171600	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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