Variant report

Variant	rs1610271
Chromosome Location	chr7:140162268-140162269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140161284..140163176-chr7:140165152..140167509,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10241951	1.00[EUR][1000 genomes]
rs10256074	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262721	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10266321	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274673	1.00[EUR][1000 genomes]
rs6967008	1.00[EUR][1000 genomes]
rs6971596	1.00[EUR][1000 genomes]
rs73485136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7799539	1.00[EUR][1000 genomes]
rs7811221	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv1795451	chr7:140155800-140163131	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140150800-140171800	Strong transcription	Fetal Thymus	thymus
3	chr7:140151000-140171600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:140151000-140171600	Strong transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:140151000-140173400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:140151200-140171600	Strong transcription	Adipose Nuclei	Adipose
7	chr7:140151200-140172200	Strong transcription	Fetal Stomach	stomach
8	chr7:140151400-140162400	Strong transcription	Thymus	Thymus
9	chr7:140151400-140163600	Strong transcription	Primary T cells from cord blood	blood
10	chr7:140151400-140171800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr7:140151400-140172200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:140151600-140172200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:140151800-140172200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:140151800-140176600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:140152200-140163000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr7:140152200-140163000	Strong transcription	Fetal Muscle Leg	muscle
17	chr7:140152200-140171400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:140152200-140172000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:140152200-140172000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr7:140152200-140172000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:140152200-140172200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr7:140152400-140163400	Strong transcription	Dnd41	blood
23	chr7:140152400-140166400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr7:140152400-140171600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:140152400-140171600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr7:140152400-140171800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:140152400-140172200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:140152600-140165800	Strong transcription	Spleen	Spleen
29	chr7:140152600-140167400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:140152600-140171800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr7:140152600-140171800	Strong transcription	K562	blood
32	chr7:140152600-140172200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:140152800-140171600	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr7:140153200-140163600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr7:140153200-140167600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:140153200-140171800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:140153800-140172200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr7:140155000-140166000	Strong transcription	GM12878-XiMat	blood
39	chr7:140155600-140175200	Weak transcription	Fetal Brain Male	brain
40	chr7:140155800-140164200	Weak transcription	Fetal Kidney	kidney
41	chr7:140155800-140164600	Weak transcription	Right Ventricle	heart
42	chr7:140156600-140169200	Weak transcription	Small Intestine	intestine
43	chr7:140156600-140171400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:140156800-140167600	Weak transcription	Brain Substantia Nigra	brain
45	chr7:140156800-140172600	Strong transcription	Fetal Intestine Large	intestine
46	chr7:140156800-140175800	Weak transcription	Fetal Heart	heart
47	chr7:140156800-140175800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr7:140156800-140177400	Weak transcription	HUVEC	blood vessel
49	chr7:140156800-140177600	Weak transcription	HSMMtube	muscle
50	chr7:140156800-140178000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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