Variant report

Variant	rs73485136
Chromosome Location	chr7:140148918-140148919
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140092620..140094140-chr7:140148753..140150999,2	K562	blood:
2	chr7:140147282..140150132-chr7:140156885..140159416,3	K562	blood:
3	chr7:140147176..140149855-chr7:140152753..140155201,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10241951	1.00[EUR][1000 genomes]
rs10256074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262721	0.85[AMR][1000 genomes]
rs10266321	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274673	1.00[EUR][1000 genomes]
rs1610271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967008	1.00[EUR][1000 genomes]
rs6971596	1.00[EUR][1000 genomes]
rs73489099	1.00[AMR][1000 genomes]
rs7799539	1.00[EUR][1000 genomes]
rs7811221	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140133200-140154200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:140135800-140151000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:140135800-140151000	Weak transcription	Fetal Brain Female	brain
5	chr7:140135800-140156000	Weak transcription	NHEK	skin
6	chr7:140136200-140149200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:140136600-140154600	Weak transcription	Fetal Brain Male	brain
8	chr7:140139200-140151400	Weak transcription	Fetal Intestine Large	intestine
9	chr7:140139400-140151200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:140139400-140152400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:140139600-140149000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:140139800-140149800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:140140600-140151600	Weak transcription	Fetal Intestine Small	intestine
14	chr7:140140800-140153800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:140142000-140151600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:140142000-140154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:140144000-140149400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:140144000-140149400	Weak transcription	Lung	lung
19	chr7:140144000-140152600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:140144000-140152800	Weak transcription	Ovary	ovary
21	chr7:140144000-140153200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:140144000-140153800	Weak transcription	HepG2	liver
23	chr7:140144000-140154200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:140144000-140154200	Weak transcription	A549	lung
25	chr7:140144000-140154400	Weak transcription	Pancreas	Pancrea
26	chr7:140144200-140149400	Weak transcription	Fetal Stomach	stomach
27	chr7:140144200-140152600	Weak transcription	K562	blood
28	chr7:140144800-140153600	Weak transcription	Brain Germinal Matrix	brain
29	chr7:140145200-140152000	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr7:140145200-140152600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:140145800-140152800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:140146000-140153800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:140146400-140154400	Weak transcription	HMEC	breast
34	chr7:140146600-140153400	Weak transcription	Gastric	stomach
35	chr7:140146800-140153400	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:140146800-140154400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:140147200-140149000	Weak transcription	HSMMtube	muscle
38	chr7:140147200-140149800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr7:140147200-140150400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr7:140147200-140153000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:140147400-140149600	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr7:140147400-140149800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr7:140147400-140151200	Weak transcription	Brain Anterior Caudate	brain
44	chr7:140147400-140151600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr7:140147400-140153600	Weak transcription	NH-A	brain
46	chr7:140147400-140153800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr7:140147600-140149400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr7:140147600-140149600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr7:140147600-140149600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr7:140147600-140149800	Enhancers	H1 Cell Line	embryonic stem cell

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