Variant report

Variant	rs10274673
Chromosome Location	chr7:140175101-140175102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140170755..140172962-chr7:140174388..140176743,3	K562	blood:
2	chr7:140170487..140172343-chr7:140174388..140176536,2	K562	blood:
3	chr7:140174451..140177169-chr7:140352584..140355463,2	MCF-7	breast:
4	chr7:140174812..140177161-chr7:140216236..140218009,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10241951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256074	1.00[EUR][1000 genomes]
rs10266321	1.00[EUR][1000 genomes]
rs1610271	1.00[EUR][1000 genomes]
rs6967008	1.00[EUR][1000 genomes]
rs6971596	1.00[EUR][1000 genomes]
rs73485136	1.00[EUR][1000 genomes]
rs7799539	1.00[EUR][1000 genomes]
rs7811221	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140151800-140176600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:140155600-140175200	Weak transcription	Fetal Brain Male	brain
4	chr7:140156800-140175800	Weak transcription	Fetal Heart	heart
5	chr7:140156800-140175800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:140156800-140177400	Weak transcription	HUVEC	blood vessel
7	chr7:140156800-140177600	Weak transcription	HSMMtube	muscle
8	chr7:140156800-140178000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:140157000-140177600	Weak transcription	NH-A	brain
10	chr7:140159400-140177400	Weak transcription	HSMM	muscle
11	chr7:140159800-140175400	Strong transcription	Fetal Intestine Small	intestine
12	chr7:140160800-140177400	Weak transcription	Osteobl	bone
13	chr7:140161000-140177000	Weak transcription	HMEC	breast
14	chr7:140161000-140177600	Weak transcription	NHDF-Ad	bronchial
15	chr7:140162200-140175800	Weak transcription	Hela-S3	cervix
16	chr7:140162400-140175800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:140165400-140176800	Weak transcription	NHLF	lung
18	chr7:140165600-140176000	Weak transcription	Stomach Mucosa	stomach
19	chr7:140165600-140177400	Weak transcription	Esophagus	oesophagus
20	chr7:140166000-140177000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:140166200-140177600	Weak transcription	Fetal Kidney	kidney
22	chr7:140167400-140177000	Weak transcription	Fetal Brain Female	brain
23	chr7:140168200-140175800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:140169400-140175800	Weak transcription	A549	lung
25	chr7:140169400-140176600	Weak transcription	NHEK	skin
26	chr7:140169400-140177000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:140169600-140177000	Weak transcription	Colon Smooth Muscle	Colon
28	chr7:140169800-140177400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:140170000-140175800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr7:140170200-140175800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:140170200-140176600	Weak transcription	Ovary	ovary
32	chr7:140170400-140177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:140170800-140176400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:140170800-140178200	Weak transcription	Gastric	stomach
35	chr7:140171000-140177400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:140171200-140175400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:140171200-140176000	Weak transcription	Brain Germinal Matrix	brain
38	chr7:140171200-140176200	Weak transcription	Brain Hippocampus Middle	brain
39	chr7:140171200-140176400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:140171200-140176600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:140171200-140176600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:140171200-140176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:140171200-140176800	Weak transcription	Brain Substantia Nigra	brain
44	chr7:140171200-140177000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr7:140171200-140177400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:140171200-140177600	Weak transcription	Brain Anterior Caudate	brain
47	chr7:140171200-140177600	Weak transcription	Psoas Muscle	Psoas
48	chr7:140171400-140175800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:140171400-140177200	Weak transcription	Fetal Lung	lung
50	chr7:140171400-140177400	Weak transcription	Placenta	Placenta

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