Variant report

Variant	rs1022427
Chromosome Location	chr10:89606189-89606190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89605493..89607494-chr10:89621366..89623222,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTEN-5	chr10:89605728-89606290	NONHSAT015455

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11202600	1.00[CEU][hapmap]
rs11202607	1.00[CEU][hapmap]
rs1234217	1.00[AFR][1000 genomes]
rs1234218	1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35667411	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89601000-89606400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:89601000-89606800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:89601400-89606400	Enhancers	HMEC	breast
4	chr10:89601800-89606400	Enhancers	NHEK	skin
5	chr10:89602200-89606200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:89603400-89607800	Weak transcription	NHLF	lung
7	chr10:89603800-89606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:89603800-89610200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:89604000-89610600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:89604200-89608400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:89604200-89609200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:89604600-89606200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:89604600-89606600	Weak transcription	Placenta	Placenta
14	chr10:89604800-89606200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:89604800-89606200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr10:89604800-89606200	Enhancers	Fetal Heart	heart
17	chr10:89604800-89606200	Enhancers	Fetal Intestine Large	intestine
18	chr10:89604800-89606400	Enhancers	NH-A	brain
19	chr10:89604800-89606400	Enhancers	Osteobl	bone
20	chr10:89605000-89610200	Weak transcription	GM12878-XiMat	blood
21	chr10:89605200-89610000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:89605200-89610200	Weak transcription	Fetal Intestine Small	intestine
23	chr10:89605400-89606200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:89605400-89606200	Flanking Active TSS	Hela-S3	cervix
25	chr10:89605600-89606400	Flanking Active TSS	A549	lung
26	chr10:89605800-89606200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:89605800-89606600	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr10:89606000-89606200	Enhancers	Stomach Mucosa	stomach
29	chr10:89606000-89610600	Weak transcription	NHDF-Ad	bronchial

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