Variant report

Variant	rs11202607
Chromosome Location	chr10:89727414-89727415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89724975..89728613-chr10:89729224..89733070,3	K562	blood:
2	chr10:89724830..89727506-chr10:89728128..89730724,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1022427	1.00[CEU][hapmap]
rs10430712	0.84[EUR][1000 genomes]
rs10430715	0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10509533	1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs11202595	0.86[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs11202597	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs11202600	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11202612	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202613	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202616	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202617	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202618	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202619	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202620	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202621	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202623	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11202625	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202626	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202629	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11525294	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12218012	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12220739	0.80[ASN][1000 genomes]
rs1234218	1.00[CEU][hapmap]
rs1234219	0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes]
rs1234220	0.86[CHB][hapmap];0.94[CHD][hapmap]
rs1234223	0.86[CHB][hapmap];0.94[CHD][hapmap]
rs34366180	0.87[ASN][1000 genomes]
rs35755883	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
4	chr10:89711000-89728000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:89712600-89731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:89713000-89728800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:89713000-89733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:89713200-89729600	Weak transcription	Fetal Brain Male	brain
9	chr10:89714600-89738600	Weak transcription	NHEK	skin
10	chr10:89715600-89728000	Weak transcription	Small Intestine	intestine
11	chr10:89717000-89727800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:89718400-89728600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:89721600-89731800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:89721800-89735800	Weak transcription	A549	lung
15	chr10:89722000-89736000	Weak transcription	NHLF	lung
16	chr10:89723400-89728800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:89723600-89728600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:89724000-89727800	Weak transcription	NHDF-Ad	bronchial
19	chr10:89724000-89728600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:89724000-89733200	Weak transcription	HSMM	muscle
21	chr10:89724000-89739000	Weak transcription	Adipose Nuclei	Adipose
22	chr10:89724200-89727600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:89724200-89729000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:89724200-89729800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:89724200-89730600	Weak transcription	HSMMtube	muscle
26	chr10:89724200-89731200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:89724200-89738600	Weak transcription	HMEC	breast
28	chr10:89724200-89738800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:89724400-89727600	Weak transcription	Fetal Kidney	kidney
30	chr10:89724400-89728200	Weak transcription	Osteobl	bone
31	chr10:89724400-89729400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:89724400-89733400	Weak transcription	Hela-S3	cervix
33	chr10:89724400-89738200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:89724400-89738600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:89724600-89729000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:89724600-89732400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:89724600-89732400	Weak transcription	Ovary	ovary
38	chr10:89724800-89727800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:89724800-89727800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:89724800-89728200	Weak transcription	Fetal Lung	lung
41	chr10:89724800-89730000	Weak transcription	Left Ventricle	heart
42	chr10:89724800-89730400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:89724800-89730600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:89724800-89732400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:89724800-89732400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:89724800-89734600	Weak transcription	NH-A	brain
47	chr10:89724800-89734800	Weak transcription	Primary B cells from cord blood	blood
48	chr10:89724800-89736200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:89724800-89738400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:89724800-89739400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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