Variant report

Variant	nsv551837
Chromosome Location	chr10:89707265-89777788
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:517)
CpG islands
(count:244)
Chromatin interactive
region (count:26)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:72)

(count:517 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:89715977-89716066	HepG2	liver:	n/a	n/a
2	BACH1	chr10:89708379-89708697	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr10:89708352-89708593	K562	blood:	n/a	n/a
4	BATF	chr10:89735932-89736221	GM12878	blood:	n/a	n/a
5	BCL3	chr10:89719899-89720474	A549	lung:	n/a	n/a
6	BCLAF1	chr10:89706486-89707437	GM12878	blood:	n/a	n/a
7	CBX3	chr10:89708370-89708575	K562	blood:	n/a	n/a
8	CBX3	chr10:89708342-89708646	K562	blood:	n/a	n/a
9	CEBPB	chr10:89712426-89712793	A549	lung:	n/a	chr10:89712582-89712593
10	CEBPB	chr10:89732188-89732504	IMR90	lung:	n/a	chr10:89732332-89732343
11	CEBPB	chr10:89712392-89712778	HepG2	liver:	n/a	chr10:89712582-89712593
12	CEBPB	chr10:89751782-89752059	IMR90	lung:	n/a	n/a
13	CEBPB	chr10:89732215-89732505	HepG2	liver:	n/a	chr10:89732332-89732343
14	CEBPB	chr10:89713810-89714091	K562	blood:	n/a	chr10:89713931-89713942
15	CEBPB	chr10:89712350-89712838	Hela-S3	cervix:	n/a	chr10:89712582-89712593
16	CEBPB	chr10:89712375-89712819	MCF-7	breast:	n/a	chr10:89712582-89712593
17	CEBPB	chr10:89712357-89712802	ECC-1	luminal epithelium:	n/a	chr10:89712582-89712593
18	CEBPB	chr10:89721062-89721529	MCF-7	breast:	n/a	n/a
19	CEBPB	chr10:89713788-89713996	HepG2	liver:	n/a	chr10:89713931-89713942
20	CEBPB	chr10:89712465-89712696	HepG2	liver:	n/a	chr10:89712582-89712593
21	CEBPB	chr10:89713859-89714022	MCF-7	breast:	n/a	chr10:89713931-89713942
22	CEBPB	chr10:89712400-89712823	ECC-1	luminal epithelium:	n/a	chr10:89712582-89712593
23	CEBPB	chr10:89713772-89714086	H1-hESC	embryonic stem cell:	n/a	chr10:89713931-89713942
24	CEBPB	chr10:89721005-89721609	A549	lung:	n/a	n/a
25	CEBPB	chr10:89709444-89709628	IMR90	lung:	n/a	n/a
26	CEBPB	chr10:89720017-89720323	A549	lung:	n/a	n/a
27	CEBPB	chr10:89712393-89712764	K562	blood:	n/a	chr10:89712582-89712593
28	CEBPB	chr10:89713886-89713979	Hela-S3	cervix:	n/a	chr10:89713931-89713942
29	CEBPB	chr10:89735996-89736234	A549	lung:	n/a	n/a
30	CEBPB	chr10:89712273-89712929	A549	lung:	n/a	chr10:89712582-89712593
31	CEBPB	chr10:89712397-89712785	A549	lung:	n/a	chr10:89712582-89712593
32	CEBPB	chr10:89709451-89709611	A549	lung:	n/a	n/a
33	CEBPB	chr10:89713784-89714086	A549	lung:	n/a	chr10:89713931-89713942
34	CEBPB	chr10:89712398-89712793	K562	blood:	n/a	chr10:89712582-89712593
35	CEBPB	chr10:89735989-89736235	Hela-S3	cervix:	n/a	n/a
36	CEBPB	chr10:89735964-89736275	IMR90	lung:	n/a	n/a
37	CEBPB	chr10:89712479-89712676	K562	blood:	n/a	chr10:89712582-89712593
38	CEBPB	chr10:89712400-89712763	H1-hESC	embryonic stem cell:	n/a	chr10:89712582-89712593
39	CEBPB	chr10:89719824-89720460	A549	lung:	n/a	chr10:89719895-89719906
40	CEBPB	chr10:89712400-89712779	IMR90	lung:	n/a	chr10:89712582-89712593
41	CEBPB	chr10:89732235-89732447	H1-hESC	embryonic stem cell:	n/a	chr10:89732332-89732343
42	CEBPB	chr10:89719951-89720325	A549	lung:	n/a	n/a
43	CEBPB	chr10:89721096-89721476	A549	lung:	n/a	n/a
44	CEBPB	chr10:89735821-89736387	HCT-116	colon:	n/a	n/a
45	CEBPB	chr10:89709528-89709601	K562	blood:	n/a	n/a
46	CEBPB	chr10:89768858-89769286	A549	lung:	n/a	n/a
47	CEBPB	chr10:89721108-89721483	IMR90	lung:	n/a	n/a
48	CEBPB	chr10:89766757-89766839	H1-hESC	embryonic stem cell:	n/a	chr10:89766761-89766772
49	CEBPB	chr10:89721117-89721455	A549	lung:	n/a	n/a
50	CEBPB	chr10:89715972-89716092	HepG2	liver:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:89736642-89736692	U87	brain:	n/a
2	chr10:89725510-89725560	HNPCEpiC	eye:	n/a
3	chr10:89733191-89733241	PFSK-1	brain:	n/a
4	chr10:89736642-89736692	AG04449	skin:	fetal
5	chr10:89725510-89725560	SK-N-MC	brain:	n/a
6	chr10:89736642-89736692	PrEC	prostate:	n/a
7	chr10:89732142-89732192	Caco-2	colon:	n/a
8	chr10:89736642-89736692	GM06990	blood:	n/a
9	chr10:89732142-89732192	BJ	skin:	n/a
10	chr10:89733191-89733241	GM12891	blood:	n/a
11	chr10:89732142-89732192	BE2_C	brain:	n/a
12	chr10:89725510-89725560	HCM	heart:	n/a
13	chr10:89732142-89732192	NH-A	brain:	n/a
14	chr10:89736642-89736692	IMR90	lung:	fetal
15	chr10:89733191-89733241	SKMC	muscle:	n/a
16	chr10:89736642-89736692	A549	lung:	n/a
17	chr10:89736642-89736692	AG09319	gingival:	n/a
18	chr10:89725510-89725560	ECC-1	luminal epithelium:	n/a
19	chr10:89732142-89732192	A549	lung:	n/a
20	chr10:89733191-89733241	HRE	kidney:	n/a
21	chr10:89732142-89732192	NHDF-neo	bronchial:	n/a
22	chr10:89732142-89732192	LNCaP	prostate:	n/a
23	chr10:89732142-89732192	HCF	heart:	n/a
24	chr10:89736642-89736692	ProgFib	skin:	n/a
25	chr10:89732142-89732192	HCM	heart:	n/a
26	chr10:89725510-89725560	HepG2	liver:	n/a
27	chr10:89733191-89733241	HUVEC	blood vessel:	n/a
28	chr10:89733191-89733241	AoSMC	blood vessel:	n/a
29	chr10:89736642-89736692	HCT-116	colon:	n/a
30	chr10:89733191-89733241	AG10803	skin:	n/a
31	chr10:89732142-89732192	K562	blood:	n/a
32	chr10:89725510-89725560	MCF10A-Er-Src	breast:	n/a
33	chr10:89732142-89732192	PFSK-1	brain:	n/a
34	chr10:89736642-89736692	NHDF-neo	bronchial:	n/a
35	chr10:89732142-89732192	HPAEpiC	pulmonary alveolar:	n/a
36	chr10:89733191-89733241	NB4	blood:	n/a
37	chr10:89725510-89725560	MCF-7	breast:	n/a
38	chr10:89725510-89725560	SK-N-SH_RA	brain:	n/a
39	chr10:89732142-89732192	Hepatocyte	liver:	n/a
40	chr10:89725510-89725560	AG09319	gingival:	n/a
41	chr10:89725510-89725560	H1-hESC	embryonic stem cell:	embryo
42	chr10:89736642-89736692	SAEC	small airway:	n/a
43	chr10:89725510-89725560	HEK293	kidney:	embryo
44	chr10:89733191-89733241	HIPEpiC	eye:	n/a
45	chr10:89725510-89725560	HIPEpiC	eye:	n/a
46	chr10:89736642-89736692	NH-A	brain:	n/a
47	chr10:89732142-89732192	HCPEpiC	choroid plexus:	n/a
48	chr10:89725510-89725560	ProgFib	skin:	n/a
49	chr10:89733191-89733241	HCF	heart:	n/a
50	chr10:89736642-89736692	HEEpiC	esophagus:	n/a

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89724975..89728613-chr10:89729224..89733070,3	K562	blood:
2	chr10:89721575..89723341-chr10:89728907..89731665,2	MCF-7	breast:
3	chr10:89621748..89623902-chr10:89723296..89725562,2	MCF-7	breast:
4	chr10:89727852..89730141-chr10:89733915..89736389,2	MCF-7	breast:
5	chr10:89620372..89623295-chr10:89720146..89723263,5	MCF-7	breast:
6	chr10:89721575..89723341-chr10:89728907..89731665,2	MCF-7	breast:
7	chr10:89721293..89722807-chr20:55841031..55842902,2	MCF-7	breast:
8	chr10:89727852..89730141-chr10:89733915..89736389,2	MCF-7	breast:
9	chr10:89620282..89622359-chr10:89713432..89715194,2	MCF-7	breast:
10	chr10:89622018..89624165-chr10:89707247..89709029,2	K562	blood:
11	chr10:89704548..89706247-chr10:89707891..89709573,2	MCF-7	breast:
12	chr10:89729355..89732120-chr10:89734867..89736636,2	K562	blood:
13	chr10:89623373..89624894-chr10:89719879..89721616,2	MCF-7	breast:
14	chr10:89724975..89728613-chr10:89729224..89733070,3	K562	blood:
15	chr10:89708994..89710668-chr10:89716753..89718565,2	K562	blood:
16	chr10:89703009..89705949-chr10:89706838..89708569,3	K562	blood:
17	chr10:89623124..89624874-chr10:89731308..89733692,2	MCF-7	breast:
18	chr10:89622117..89624180-chr10:89706154..89707950,2	MCF-7	breast:
19	chr10:89708994..89710668-chr10:89716753..89718565,2	K562	blood:
20	chr10:89578473..89580973-chr10:89716614..89719298,2	K562	blood:
21	chr10:89729355..89732120-chr10:89734867..89736636,2	K562	blood:
22	chr10:89705366..89707879-chr20:50382836..50384376,2	MCF-7	breast:
23	chr10:89621701..89623666-chr10:89733885..89736299,2	MCF-7	breast:
24	chr10:89724830..89727506-chr10:89728128..89730724,2	K562	blood:
25	chr10:89724830..89727506-chr10:89728128..89730724,2	K562	blood:
26	chr10:89623108..89624927-chr10:89720086..89724191,3	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTEN-1	chr10:89740504-89740717	XLOC_008547
2	lnc-KLLN-1	chr10:89707608-89708694	ENSG00000245981
3	lnc-PTEN-1	chr10:89739717-89739877	XLOC_008547
4	lnc-PAPSS2-10	chr10:89706925-89708694	NONHSAT015462

No data

(count:72 , 50 per page) page: 1 2

No.	miRNA target gene	miRNA name	Chromosome Location
1	PTEN	hsa-miR-23b-3p	chr10:89727495-89727515
2	PTEN	hsa-miR-29a-3p	chr10:89725905-89725912
3	PTEN	hsa-miR-144-3p	chr10:89726375-89726397
4	PTEN	hsa-miR-19b-3p	chr10:89725681-89725705
5	PTEN	hsa-miR-216a-5p	chr10:89707820-89707843
6	PTEN	hsa-miR-141-3p	chr10:89728471-89728492
7	PTEN	hsa-miR-141-3p	chr10:89707760-89707781
8	PTEN	hsa-miR-144-3p	chr10:89728146-89728152
9	PTEN	hsa-miR-107	chr10:89707878-89707901
10	PTEN	hsa-miR-19a-3p	chr10:89727481-89727487
11	PTEN	hsa-miR-216a-5p	chr10:89726320-89726341
12	PTEN	hsa-miR-103a-3p	chr10:89726560-89726581
13	PTEN	hsa-miR-494-3p	chr10:89728052-89728074
14	PTEN	hsa-miR-23a-3p	chr10:89727495-89727515
15	PTEN	hsa-miR-19b-3p	chr10:89726450-89726457
16	PTEN	hsa-miR-107	chr10:89726296-89726318
17	PTEN	hsa-miR-144-3p	chr10:89726483-89726504
18	PTEN	hsa-miR-29a-3p	chr10:89726955-89726977
19	PTEN	hsa-miR-23b-3p	chr10:89726824-89726844
20	PTEN	hsa-miR-141-3p	chr10:89728486-89728492
21	PTEN	hsa-miR-494-3p	chr10:89727542-89727549
22	PTEN	hsa-miR-26a-5p	chr10:89725255-89725276
23	PTEN	hsa-miR-18a-5p	chr10:89727281-89727304
24	PTEN	hsa-miR-494-3p	chr10:89727526-89727549
25	PTEN	hsa-miR-29b-3p	chr10:89725889-89725912
26	PTEN	hsa-miR-519d-3p	chr10:89725488-89725508
27	PTEN	hsa-miR-494-3p	chr10:89728027-89728034
28	PTEN	hsa-miR-23b-3p	chr10:89726837-89726844
29	PTEN	hsa-miR-19a-3p	chr10:89725625-89725647
30	PTEN	hsa-miR-19a-3p	chr10:89725680-89725705
31	PTEN	hsa-miR-519d-3p	chr10:89725501-89725507
32	PTEN	hsa-miR-103a-3p	chr10:89707878-89707901
33	PTEN	hsa-miR-26a-5p	chr10:89726473-89726497
34	PTEN	hsa-miR-20a-5p	chr10:89725501-89725507
35	PTEN	hsa-miR-93-5p	chr10:89725486-89725508
36	PTEN	hsa-miR-103a-3p	chr10:89726296-89726318
37	PTEN	hsa-miR-23a-3p	chr10:89726824-89726844
38	PTEN	hsa-miR-19b-3p	chr10:89726437-89726457
39	PTEN	hsa-miR-141-3p	chr10:89726682-89726703
40	PTEN	hsa-miR-19b-3p	chr10:89725625-89725647
41	PTEN	hsa-miR-29b-3p	chr10:89726957-89726977
42	PTEN	hsa-miR-494-3p	chr10:89725701-89725723
43	PTEN	hsa-miR-19a-3p	chr10:89726437-89726457
44	PTEN	hsa-miR-19a-3p	chr10:89726450-89726457
45	PTEN	hsa-miR-106b-5p	chr10:89725501-89725507
46	PTEN	hsa-miR-23b-3p	chr10:89727508-89727515
47	PTEN	hsa-miR-19b-3p	chr10:89727464-89727488
48	PTEN	hsa-miR-26a-5p	chr10:89725270-89725276
49	PTEN	hsa-miR-23a-3p	chr10:89726837-89726844
50	PTEN	hsa-miR-26a-5p	chr10:89727848-89727855

Variant related genes	Relation type
ENSG00000200891	TF binding region
PTEN	TF binding region
ENSG00000200891	CpG island
PTEN	CpG island
ENSG00000213613	chromatin interactions
ENSG00000227268	chromatin interactions
ENSG00000226308	chromatin interactions
ENSG00000171862	chromatin interactions
ENSG00000101144	chromatin interactions
ZEB2	miRNA target sites

Extended variants
information (count: 2311 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:2311 , 50 per page) page: 1 2 3 4 5 6 7 ... 47

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2248293	chr10:89707265-89707266	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs141835962	chr10:89707267-89707268	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
3	rs150618061	chr10:89707292-89707293	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
4	rs551964052	chr10:89707321-89707322	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
5	rs139940393	chr10:89707335-89707336	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
6	rs182736027	chr10:89707344-89707345	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
7	rs549628095	chr10:89707371-89707372	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
8	rs537943421	chr10:89707379-89707380	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
9	rs200749330	chr10:89707414-89707415	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
10	rs34636100	chr10:89707420-89707421	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
11	rs556003982	chr10:89707424-89707425	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
12	rs556327552	chr10:89707470-89707471	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
13	rs577671573	chr10:89707480-89707481	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
14	rs35309905	chr10:89707494-89707495	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
15	rs35286623	chr10:89707496-89707497	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs562226172	chr10:89707517-89707518	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
17	rs186685622	chr10:89707540-89707541	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
18	rs200302788	chr10:89707545-89707546	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
19	rs34173862	chr10:89707557-89707558	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
20	rs538428124	chr10:89707561-89707562	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
21	rs561222828	chr10:89707569-89707570	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
22	rs34262484	chr10:89707633-89707634	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs189770181	chr10:89707635-89707636	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
24	rs564735928	chr10:89707638-89707639	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
25	rs143423415	chr10:89707661-89707662	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
26	rs201771341	chr10:89707662-89707663	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
27	rs369911029	chr10:89707663-89707664	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
28	rs573433568	chr10:89707697-89707698	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
29	rs182720686	chr10:89707716-89707717	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
30	rs547535136	chr10:89707801-89707802	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
31	rs111913587	chr10:89707886-89707887	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	Overlapped CNVs	n/a
32	rs189031528	chr10:89707899-89707900	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	Overlapped CNVs	n/a
33	rs574493309	chr10:89707991-89707992	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
34	rs527869701	chr10:89707997-89707998	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
35	rs193098491	chr10:89707998-89707999	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
36	rs140057656	chr10:89708031-89708032	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
37	rs572287141	chr10:89708054-89708055	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
38	rs185111492	chr10:89708064-89708065	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
39	rs533497807	chr10:89708065-89708066	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
40	rs564498680	chr10:89708169-89708170	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
41	rs529255963	chr10:89708171-89708172	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
42	rs550111275	chr10:89708214-89708215	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
43	rs145601889	chr10:89708307-89708308	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
44	rs538721127	chr10:89708310-89708311	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
45	rs371002760	chr10:89708311-89708312	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
46	rs369442958	chr10:89708365-89708366	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
47	rs398014376	chr10:89708369-89708370	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
48	rs112633872	chr10:89708439-89708440	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
49	rs368608689	chr10:89708453-89708454	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
50	rs553829097	chr10:89708513-89708514	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	21569311	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Melanoma	20877625	CNVD
Non-syndromic sensorineural hearing loss	20020426	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	22065749	CNVD
Cancer	22000013	CNVD
Colon cancer	22065749	CNVD
Endometrial cancer	22065749	CNVD
Lung cancer	20668451	CNVD
Breast cancer	17634833	CNVD
Cancer	20215515	CNVD
Glioblastoma multiforme	21727940	CNVD
Prostate cancer	19363497	CNVD
Prostate cancer	17700571	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cutaneous malignant melanoma	18794153	CNVD
Ovarian cancer	21781307	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20964600	CNVD
Endometrial cancer	19261849	CNVD
Central neurocytomas	17123091	CNVD
Malignant melanoma	17260012	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung adenocarcinoma	17982442	CNVD
Ovarian cancer	21720365	CNVD

Chromatin state (count:1052 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674200-89711000	Weak transcription	HepG2	liver
6	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
7	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
9	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
11	chr10:89684000-89707400	Strong transcription	Dnd41	blood
12	chr10:89684000-89725600	Weak transcription	Gastric	stomach
13	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
14	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:89686600-89711200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:89686800-89708400	Weak transcription	Aorta	Aorta
17	chr10:89686800-89710400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:89687000-89712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:89687600-89711400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
22	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:89691200-89708400	Strong transcription	Fetal Thymus	thymus
24	chr10:89691600-89711400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr10:89692200-89712000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:89695600-89711400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:89695800-89712200	Weak transcription	Brain Anterior Caudate	brain
29	chr10:89695800-89712200	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:89696000-89712000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:89696000-89712200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
33	chr10:89696600-89712000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:89697400-89712000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:89699000-89712000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:89699000-89718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:89699200-89707800	Weak transcription	HUVEC	blood vessel
41	chr10:89699200-89711600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr10:89699800-89707800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:89700000-89707600	Weak transcription	A549	lung
44	chr10:89700000-89707600	Weak transcription	K562	blood
45	chr10:89700200-89708400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:89700200-89723600	Weak transcription	Ovary	ovary
47	chr10:89700600-89707400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:89700600-89708800	Strong transcription	GM12878-XiMat	blood
49	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
50	chr10:89701400-89712400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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