Variant report

Variant	rs35286623
Chromosome Location	chr10:89707496-89707497
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:89704864-89708008	GM12892	blood:	n/a	n/a
2	NFATC1	chr10:89704984-89708110	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:89707489-89707626	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr10:89707494-89707772	GM12891	blood:	n/a	n/a
5	POLR2A	chr10:89707494-89707994	GM12892	blood:	n/a	n/a
6	POLR2A	chr10:89705303-89708643	K562	blood:	n/a	n/a
7	POLR2A	chr10:89707480-89707995	GM12891	blood:	n/a	n/a
8	POLR2A	chr10:89707466-89707664	GM12878	blood:	n/a	n/a
9	POLR2A	chr10:89707457-89707948	GM12891	blood:	n/a	n/a
10	MTA3	chr10:89707454-89707997	GM12878	blood:	n/a	n/a
11	POLR2A	chr10:89704927-89708034	GM12892	blood:	n/a	n/a
12	POLR2A	chr10:89707450-89708026	GM12891	blood:	n/a	n/a
13	POLR2A	chr10:89707482-89707924	GM12892	blood:	n/a	n/a
14	POLR2A	chr10:89704838-89707908	GM12891	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89703009..89705949-chr10:89706838..89708569,3	K562	blood:
2	chr10:89622018..89624165-chr10:89707247..89709029,2	K562	blood:
3	chr10:89705366..89707879-chr20:50382836..50384376,2	MCF-7	breast:
4	chr10:89622117..89624180-chr10:89706154..89707950,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PAPSS2-10	chr10:89706925-89708694	NONHSAT015462

No data

Variant related genes	Relation type
PTEN	TF binding region
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction
ENSG00000213613	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17101804	1.00[AFR][1000 genomes]
rs17106669	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34370136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34821441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35596448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780924	0.89[EUR][1000 genomes]
rs55934143	0.87[EUR][1000 genomes]
rs56014839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814166	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814183	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72814184	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72814186	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72814188	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72814190	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72814201	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72814202	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72816104	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72816109	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72816113	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674200-89711000	Weak transcription	HepG2	liver
6	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
7	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
9	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
11	chr10:89684000-89725600	Weak transcription	Gastric	stomach
12	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
13	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:89686600-89711200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:89686800-89708400	Weak transcription	Aorta	Aorta
16	chr10:89686800-89710400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:89687000-89712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:89687600-89711400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
21	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:89691200-89708400	Strong transcription	Fetal Thymus	thymus
23	chr10:89691600-89711400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:89692200-89712000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:89695600-89711400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr10:89695800-89712200	Weak transcription	Brain Anterior Caudate	brain
28	chr10:89695800-89712200	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:89696000-89712000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:89696000-89712200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
32	chr10:89696600-89712000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:89697400-89712000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:89699000-89712000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:89699000-89718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:89699200-89707800	Weak transcription	HUVEC	blood vessel
40	chr10:89699200-89711600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr10:89699800-89707800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:89700000-89707600	Weak transcription	A549	lung
43	chr10:89700000-89707600	Weak transcription	K562	blood
44	chr10:89700200-89708400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:89700200-89723600	Weak transcription	Ovary	ovary
46	chr10:89700600-89708800	Strong transcription	GM12878-XiMat	blood
47	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
48	chr10:89701400-89712400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:89701800-89714000	Weak transcription	Brain Germinal Matrix	brain
50	chr10:89702000-89715800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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