Variant report

Variant	rs56378211
Chromosome Location	chr10:89668234-89668235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89664308..89666763-chr10:89666993..89669355,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17101804	1.00[AFR][1000 genomes]
rs17106669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34370136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34821441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35596448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780924	0.85[EUR][1000 genomes]
rs55934143	0.83[EUR][1000 genomes]
rs56014839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814166	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814183	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72814184	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72814186	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72814188	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72814190	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72814201	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72814202	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72816104	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72816109	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72816113	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1035154	chr10:89657150-89676485	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
2	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
5	chr10:89647800-89671000	Weak transcription	A549	lung
6	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:89648200-89674400	Weak transcription	Right Ventricle	heart
8	chr10:89651800-89672600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr10:89653200-89675200	Weak transcription	NHLF	lung
10	chr10:89653400-89671600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:89653400-89672600	Weak transcription	NHEK	skin
12	chr10:89654200-89671400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:89655000-89672000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:89656000-89675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:89656400-89672600	Weak transcription	NHDF-Ad	bronchial
16	chr10:89656600-89675800	Weak transcription	Osteobl	bone
17	chr10:89658400-89676400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:89662200-89672400	Weak transcription	HepG2	liver
19	chr10:89662800-89670600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr10:89663400-89670800	Strong transcription	Dnd41	blood
21	chr10:89663400-89675200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:89663400-89675200	Weak transcription	Gastric	stomach
23	chr10:89663600-89671600	Weak transcription	Aorta	Aorta
24	chr10:89663600-89671600	Weak transcription	Ovary	ovary
25	chr10:89663600-89672200	Weak transcription	Liver	Liver
26	chr10:89663600-89672800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:89663600-89675200	Weak transcription	Pancreas	Pancrea
28	chr10:89663600-89686400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:89663600-89687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:89663800-89670000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:89663800-89675200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
33	chr10:89664000-89671200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:89664000-89671600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:89664000-89674200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:89664000-89674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:89664000-89675000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:89664000-89675200	Strong transcription	Fetal Thymus	thymus
39	chr10:89664000-89675200	Weak transcription	Left Ventricle	heart
40	chr10:89664000-89675200	Weak transcription	Lung	lung
41	chr10:89664000-89681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:89664200-89672200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:89664200-89674200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:89664200-89674400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr10:89664200-89675200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:89664400-89669200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:89664400-89670400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:89664600-89669000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:89664600-89675200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:89664800-89669000	Weak transcription	Fetal Stomach	stomach

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