Variant report

Variant	rs72814147
Chromosome Location	chr10:89605008-89605009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:89604803-89606433	MCF10A-Er-Src	breast:	n/a	chr10:89605208-89605219
2	MYC	chr10:89604942-89605235	MCF10A-Er-Src	breast:	n/a	n/a
3	SP1	chr10:89604901-89605522	HCT-116	colon:	n/a	n/a
4	FOS	chr10:89604719-89606212	MCF10A-Er-Src	breast:	n/a	chr10:89605208-89605219
5	STAT3	chr10:89604939-89605327	MCF10A-Er-Src	breast:	n/a	n/a
6	FOSL2	chr10:89604690-89606292	A549	lung:	n/a	n/a
7	MYC	chr10:89604960-89605286	MCF10A-Er-Src	breast:	n/a	n/a
8	JUND	chr10:89604879-89605545	HCT-116	colon:	n/a	n/a
9	FOSL2	chr10:89604992-89605430	MCF-7	breast:	n/a	n/a
10	JUND	chr10:89604894-89605548	SK-N-SH	brain:	n/a	n/a
11	FOSL2	chr10:89604921-89605368	SK-N-SH	brain:	n/a	n/a
12	FOSL1	chr10:89604787-89606276	HCT-116	colon:	n/a	n/a
13	SP1	chr10:89604891-89606472	A549	lung:	n/a	n/a
14	FOS	chr10:89605001-89605485	HUVEC	blood vessel:	n/a	chr10:89605208-89605219
15	RCOR1	chr10:89604944-89606630	Hela-S3	cervix:	n/a	n/a
16	JUND	chr10:89604817-89606252	HCT-116	colon:	n/a	n/a
17	FOSL1	chr10:89604924-89605541	HCT-116	colon:	n/a	n/a
18	SP1	chr10:89604721-89606251	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89603716..89605237-chr8:96269842..96271477,2	MCF-7	breast:

Variant related genes	Relation type
ATAD1	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17101804	1.00[AFR][1000 genomes]
rs17106669	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34370136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34821441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35596448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780924	0.80[EUR][1000 genomes]
rs56014839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814166	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814183	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72814184	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72814186	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72814188	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72814190	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72814201	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72814202	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72816104	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72816109	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72816113	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89601000-89606400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:89601000-89606800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:89601400-89606400	Enhancers	HMEC	breast
4	chr10:89601800-89606400	Enhancers	NHEK	skin
5	chr10:89602200-89606200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:89602600-89605400	Weak transcription	Pancreas	Pancrea
7	chr10:89603400-89605400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:89603400-89605800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:89603400-89607800	Weak transcription	NHLF	lung
10	chr10:89603800-89606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:89603800-89610200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:89604000-89605200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:89604000-89610600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:89604200-89605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:89604200-89608400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:89604200-89609200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:89604400-89605600	Weak transcription	Gastric	stomach
18	chr10:89604600-89606200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:89604600-89606600	Weak transcription	Placenta	Placenta
20	chr10:89604800-89605200	Enhancers	Fetal Intestine Small	intestine
21	chr10:89604800-89605200	Flanking Active TSS	A549	lung
22	chr10:89604800-89605400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr10:89604800-89605600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:89604800-89606000	Weak transcription	Stomach Mucosa	stomach
25	chr10:89604800-89606000	Enhancers	NHDF-Ad	bronchial
26	chr10:89604800-89606200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:89604800-89606200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:89604800-89606200	Enhancers	Fetal Heart	heart
29	chr10:89604800-89606200	Enhancers	Fetal Intestine Large	intestine
30	chr10:89604800-89606400	Enhancers	NH-A	brain
31	chr10:89604800-89606400	Enhancers	Osteobl	bone
32	chr10:89605000-89605200	Enhancers	HUVEC	blood vessel
33	chr10:89605000-89605400	Enhancers	Hela-S3	cervix
34	chr10:89605000-89610200	Weak transcription	GM12878-XiMat	blood

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