Variant report

Variant	rs56014839
Chromosome Location	chr10:89663981-89663982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17101804	1.00[AFR][1000 genomes]
rs17106669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34370136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34821441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35596448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780924	0.85[EUR][1000 genomes]
rs55934143	0.83[EUR][1000 genomes]
rs56378211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814166	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814183	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72814184	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72814186	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72814188	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72814190	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72814201	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72814202	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72816104	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72816109	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72816113	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1035154	chr10:89657150-89676485	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
2	chr10:89647000-89667400	Weak transcription	HMEC	breast
3	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
6	chr10:89647800-89665600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:89647800-89671000	Weak transcription	A549	lung
8	chr10:89648000-89664200	Weak transcription	NH-A	brain
9	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:89648200-89674400	Weak transcription	Right Ventricle	heart
11	chr10:89651800-89672600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:89653200-89675200	Weak transcription	NHLF	lung
13	chr10:89653400-89671600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:89653400-89672600	Weak transcription	NHEK	skin
15	chr10:89654200-89671400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:89655000-89672000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:89655600-89665200	Weak transcription	HSMM	muscle
18	chr10:89656000-89675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:89656400-89672600	Weak transcription	NHDF-Ad	bronchial
20	chr10:89656600-89675800	Weak transcription	Osteobl	bone
21	chr10:89657400-89664600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:89658400-89676400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:89661800-89664400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr10:89661800-89664800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
25	chr10:89662000-89664000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr10:89662000-89664400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:89662000-89664800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:89662000-89665000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:89662000-89665000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:89662000-89665400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:89662200-89664400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:89662200-89672400	Weak transcription	HepG2	liver
33	chr10:89662400-89664200	ZNF genes & repeats	Fetal Lung	lung
34	chr10:89662400-89665000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr10:89662400-89666400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:89662600-89664200	ZNF genes & repeats	Fetal Muscle Leg	muscle
37	chr10:89662800-89664000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:89662800-89664000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:89662800-89664000	ZNF genes & repeats	Fetal Thymus	thymus
40	chr10:89662800-89664200	ZNF genes & repeats	Primary B cells from cord blood	blood
41	chr10:89662800-89664200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:89662800-89664600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:89662800-89664800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr10:89662800-89664800	ZNF genes & repeats	Fetal Stomach	stomach
45	chr10:89662800-89665000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:89662800-89665600	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr10:89662800-89670600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr10:89663000-89664000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:89663000-89664000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:89663000-89664000	ZNF genes & repeats	Brain Hippocampus Middle	brain

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