Variant report

Variant	rs553829097
Chromosome Location	chr10:89708513-89708514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:49)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:49 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:89708267-89708716	K562	blood:	n/a	n/a
2	FOSL2	chr10:89708378-89708622	A549	lung:	n/a	n/a
3	JUND	chr10:89708370-89708782	A549	lung:	n/a	n/a
4	CBX3	chr10:89708370-89708575	K562	blood:	n/a	n/a
5	IRF1	chr10:89708226-89708596	K562	blood:	n/a	n/a
6	POLR2A	chr10:89708402-89708664	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr10:89708333-89708719	GM12891	blood:	n/a	n/a
8	FOSL1	chr10:89708196-89708807	HCT-116	colon:	n/a	n/a
9	POLR2A	chr10:89708412-89708660	GM12878	blood:	n/a	n/a
10	TBL1XR1	chr10:89708429-89708575	K562	blood:	n/a	n/a
11	POLR2A	chr10:89708289-89708643	GM12891	blood:	n/a	n/a
12	POLR2A	chr10:89708323-89708861	GM12892	blood:	n/a	n/a
13	EP300	chr10:89708331-89708595	K562	blood:	n/a	n/a
14	MAFK	chr10:89708324-89708651	H1-hESC	embryonic stem cell:	n/a	n/a
15	HCFC1	chr10:89708448-89708622	K562	blood:	n/a	n/a
16	NFATC1	chr10:89708219-89709297	GM12878	blood:	n/a	n/a
17	NR2F2	chr10:89708195-89708639	K562	blood:	n/a	n/a
18	FOS	chr10:89708389-89708572	MCF10A-Er-Src	breast:	n/a	n/a
19	RAD21	chr10:89708379-89708627	SK-N-SH_RA	brain:	n/a	n/a
20	FOS	chr10:89708283-89708604	HUVEC	blood vessel:	n/a	n/a
21	POLR2A	chr10:89705303-89708643	K562	blood:	n/a	n/a
22	YY1	chr10:89708367-89708578	K562	blood:	n/a	n/a
23	MAFK	chr10:89708372-89708552	IMR90	lung:	n/a	n/a
24	CBX3	chr10:89708342-89708646	K562	blood:	n/a	n/a
25	JUN	chr10:89708101-89708735	K562	blood:	n/a	n/a
26	HDAC2	chr10:89708408-89708632	K562	blood:	n/a	n/a
27	POLR2A	chr10:89708418-89708645	GM12892	blood:	n/a	n/a
28	POLR2A	chr10:89708304-89708744	GM12878	blood:	n/a	n/a
29	POLR2A	chr10:89708403-89708715	GM12891	blood:	n/a	n/a
30	POLR2A	chr10:89708405-89708691	K562	blood:	n/a	n/a
31	BACH1	chr10:89708352-89708593	K562	blood:	n/a	n/a
32	UBTF	chr10:89708383-89708568	K562	blood:	n/a	n/a
33	FOSL2	chr10:89708277-89708765	A549	lung:	n/a	n/a
34	MAFK	chr10:89708508-89708568	Hela-S3	cervix:	n/a	n/a
35	RCOR1	chr10:89708344-89708657	K562	blood:	n/a	n/a
36	POLR2A	chr10:89708280-89708749	GM12892	blood:	n/a	n/a
37	POLR2A	chr10:89708496-89708754	Hela-S3	cervix:	n/a	n/a
38	FOS	chr10:89708375-89708543	MCF10A-Er-Src	breast:	n/a	n/a
39	MAFF	chr10:89708326-89708655	K562	blood:	n/a	n/a
40	POLR2A	chr10:89708418-89708610	HCT-116	colon:	n/a	n/a
41	RXRA	chr10:89708195-89708673	SK-N-SH	brain:	n/a	n/a
42	POLR2A	chr10:89708405-89708666	GM12878	blood:	n/a	n/a
43	BACH1	chr10:89708379-89708697	H1-hESC	embryonic stem cell:	n/a	n/a
44	FOS	chr10:89708343-89708641	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr10:89708373-89708624	GM12891	blood:	n/a	n/a
46	FOS	chr10:89708377-89708567	MCF10A-Er-Src	breast:	n/a	n/a
47	NR2F2	chr10:89708165-89708756	K562	blood:	n/a	n/a
48	MAFK	chr10:89708340-89708709	K562	blood:	n/a	n/a
49	POLR2A	chr10:89708296-89708666	GM12892	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89703009..89705949-chr10:89706838..89708569,3	K562	blood:
2	chr10:89622018..89624165-chr10:89707247..89709029,2	K562	blood:
3	chr10:89704548..89706247-chr10:89707891..89709573,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLLN-1	chr10:89707608-89708694	ENSG00000245981
2	lnc-PAPSS2-10	chr10:89706925-89708694	NONHSAT015462

No data

Variant related genes	Relation type
PTEN	TF binding region
ENSG00000213613	Chromatin interaction
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674200-89711000	Weak transcription	HepG2	liver
6	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
7	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
9	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
11	chr10:89684000-89725600	Weak transcription	Gastric	stomach
12	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
13	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:89686600-89711200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:89686800-89710400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:89687000-89712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:89687600-89711400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
20	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:89691600-89711400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:89692200-89712000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:89695600-89711400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:89695800-89712200	Weak transcription	Brain Anterior Caudate	brain
26	chr10:89695800-89712200	Weak transcription	Colon Smooth Muscle	Colon
27	chr10:89696000-89712000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr10:89696000-89712200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
30	chr10:89696600-89712000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr10:89697400-89712000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:89699000-89712000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:89699000-89718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:89699200-89711600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:89700200-89723600	Weak transcription	Ovary	ovary
39	chr10:89700600-89708800	Strong transcription	GM12878-XiMat	blood
40	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
41	chr10:89701400-89712400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:89701800-89714000	Weak transcription	Brain Germinal Matrix	brain
43	chr10:89702000-89715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr10:89702400-89711400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:89702400-89711800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr10:89702600-89710800	Weak transcription	NHLF	lung
47	chr10:89703000-89711400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:89703200-89710800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:89704600-89712600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain

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