Variant report

Variant	rs11202621
Chromosome Location	chr10:89764153-89764154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10430712	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10430715	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10509533	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs11202595	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11202597	1.00[JPT][hapmap]
rs11202600	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11202607	0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202611	0.85[ASN][1000 genomes]
rs11202612	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202613	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202616	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202617	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202618	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202623	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11202625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11202628	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11202629	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11525294	0.84[EUR][1000 genomes]
rs12218012	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1234219	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs35755883	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3387188	chr10:89743021-89767378	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89758400-89785800	Weak transcription	Aorta	Aorta
2	chr10:89761800-89766000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:89762400-89765000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:89763200-89765000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:89764000-89765000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:89764000-89765000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:89764000-89765000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:89764000-89765000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:89764000-89765000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:89764000-89765000	Enhancers	NHDF-Ad	bronchial

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