Variant report

Variant	rs11202595
Chromosome Location	chr10:89646959-89646960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89646944..89651726-chr10:89652897..89657139,4	MCF-7	breast:
2	chr10:89639033..89641731-chr10:89644524..89647018,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10430715	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10509533	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs11202597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202599	0.91[ASN][1000 genomes]
rs11202600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11202607	0.86[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs11202611	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11525294	0.93[ASN][1000 genomes]
rs12220739	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1234219	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs1234220	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1234223	1.00[CHB][hapmap]
rs34366180	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35395344	0.81[AMR][1000 genomes]
rs35755883	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv551832	chr10:89630424-89650759	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:89628800-89647000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:89631000-89647400	Weak transcription	Fetal Brain Male	brain
5	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
6	chr10:89631600-89647400	Weak transcription	Gastric	stomach
7	chr10:89631600-89647400	Weak transcription	Psoas Muscle	Psoas
8	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
9	chr10:89633400-89647400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
11	chr10:89633800-89655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:89636000-89655400	Weak transcription	Brain Substantia Nigra	brain
13	chr10:89636200-89661800	Weak transcription	Brain Anterior Caudate	brain
14	chr10:89636800-89649400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:89638200-89647400	Weak transcription	Right Ventricle	heart
16	chr10:89639000-89655400	Weak transcription	Fetal Heart	heart
17	chr10:89639000-89655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:89639000-89656200	Weak transcription	Stomach Mucosa	stomach
19	chr10:89640000-89648000	Weak transcription	K562	blood
20	chr10:89641600-89663000	Weak transcription	Esophagus	oesophagus
21	chr10:89641800-89648000	ZNF genes & repeats	GM12878-XiMat	blood
22	chr10:89642400-89652400	Weak transcription	Aorta	Aorta
23	chr10:89642600-89657000	Strong transcription	Dnd41	blood
24	chr10:89643600-89648400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:89643800-89648600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:89644600-89647000	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr10:89644600-89647200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr10:89644600-89647800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:89644600-89648000	Strong transcription	HSMM	muscle
30	chr10:89644600-89648200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:89644600-89648200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:89644600-89648400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr10:89644600-89650400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:89644600-89654000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:89644800-89647200	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr10:89644800-89647600	Strong transcription	HUVEC	blood vessel
37	chr10:89644800-89648200	Strong transcription	Hela-S3	cervix
38	chr10:89644800-89648600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr10:89644800-89648600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:89644800-89648800	Strong transcription	Fetal Intestine Large	intestine
41	chr10:89645000-89647000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr10:89645000-89651000	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr10:89645200-89647800	Strong transcription	Liver	Liver
44	chr10:89645200-89648400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:89645200-89648600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr10:89645200-89651400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr10:89645400-89647200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
48	chr10:89645400-89647400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:89645600-89647000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
50	chr10:89645600-89647200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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