Variant report

Variant	rs11202597
Chromosome Location	chr10:89665190-89665191
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89664308..89666763-chr10:89666993..89669355,2	MCF-7	breast:
2	chr10:89622810..89625239-chr10:89664695..89667613,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10430715	1.00[JPT][hapmap]
rs10509533	0.86[JPT][hapmap]
rs11202595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202599	0.91[ASN][1000 genomes]
rs11202600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11202607	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs11202611	0.82[AMR][1000 genomes]
rs11525294	0.93[ASN][1000 genomes]
rs12220739	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1234219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1234220	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1234223	1.00[CHB][hapmap]
rs34366180	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35395344	0.84[AMR][1000 genomes]
rs35755883	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1035154	chr10:89657150-89676485	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
2	chr10:89647000-89667400	Weak transcription	HMEC	breast
3	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
6	chr10:89647800-89665600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:89647800-89671000	Weak transcription	A549	lung
8	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:89648200-89674400	Weak transcription	Right Ventricle	heart
10	chr10:89651800-89672600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:89653200-89675200	Weak transcription	NHLF	lung
12	chr10:89653400-89671600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:89653400-89672600	Weak transcription	NHEK	skin
14	chr10:89654200-89671400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:89655000-89672000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:89655600-89665200	Weak transcription	HSMM	muscle
17	chr10:89656000-89675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:89656400-89672600	Weak transcription	NHDF-Ad	bronchial
19	chr10:89656600-89675800	Weak transcription	Osteobl	bone
20	chr10:89658400-89676400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:89662000-89665400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:89662200-89672400	Weak transcription	HepG2	liver
23	chr10:89662400-89666400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:89662800-89665600	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr10:89662800-89670600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:89663000-89665200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:89663000-89665800	ZNF genes & repeats	GM12878-XiMat	blood
28	chr10:89663200-89668000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr10:89663400-89670800	Strong transcription	Dnd41	blood
30	chr10:89663400-89675200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:89663400-89675200	Weak transcription	Gastric	stomach
32	chr10:89663600-89665200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:89663600-89665200	Weak transcription	Esophagus	oesophagus
34	chr10:89663600-89665400	Weak transcription	Spleen	Spleen
35	chr10:89663600-89665600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:89663600-89665800	Weak transcription	Brain Substantia Nigra	brain
37	chr10:89663600-89666000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr10:89663600-89666000	Weak transcription	Brain Anterior Caudate	brain
39	chr10:89663600-89666000	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:89663600-89667400	Weak transcription	Hela-S3	cervix
41	chr10:89663600-89668200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr10:89663600-89671600	Weak transcription	Aorta	Aorta
43	chr10:89663600-89671600	Weak transcription	Ovary	ovary
44	chr10:89663600-89672200	Weak transcription	Liver	Liver
45	chr10:89663600-89672800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:89663600-89675200	Weak transcription	Pancreas	Pancrea
47	chr10:89663600-89686400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr10:89663600-89687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:89663800-89665200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:89663800-89665400	Strong transcription	Thymus	Thymus

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