Variant report

Variant	rs11202611
Chromosome Location	chr10:89750883-89750884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10430712	0.85[ASN][1000 genomes]
rs10430715	0.85[ASN][1000 genomes]
rs11202595	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11202597	0.82[AMR][1000 genomes]
rs11202612	0.85[ASN][1000 genomes]
rs11202613	0.85[ASN][1000 genomes]
rs11202616	0.87[ASN][1000 genomes]
rs11202617	0.87[ASN][1000 genomes]
rs11202618	0.87[ASN][1000 genomes]
rs11202619	0.85[ASN][1000 genomes]
rs11202620	0.85[ASN][1000 genomes]
rs11202621	0.85[ASN][1000 genomes]
rs11202623	0.85[ASN][1000 genomes]
rs11202625	0.82[ASN][1000 genomes]
rs11202626	0.82[ASN][1000 genomes]
rs11202628	0.82[ASN][1000 genomes]
rs12220739	0.82[AMR][1000 genomes]
rs34366180	0.85[AMR][1000 genomes]
rs41418344	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3387188	chr10:89743021-89767378	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89747800-89751000	Weak transcription	Dnd41	blood
2	chr10:89750600-89752000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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