Variant report

Variant	rs10224549
Chromosome Location	chr7:151024319-151024320
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10276600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2471913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2471914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2471915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2471916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2487158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794696	chr7:151023630-151049503	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151017200-151025400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:151019800-151029800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:151024200-151024600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links