Variant report

Variant	rs10225163
Chromosome Location	chr7:27925645-27925646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27924120..27926440-chr7:27928203..27929824,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10266923	0.91[GIH][hapmap];0.87[MEX][hapmap]
rs10452749	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10464330	0.99[ASN][1000 genomes]
rs16874393	0.86[CHB][hapmap]
rs17150572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17155969	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs17155971	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs73083392	0.95[ASN][1000 genomes]
rs7789880	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1018550	chr7:27844038-27925645	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10225163	ADCYAP1R1	cis	parietal	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27906200-27933000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:27907000-27930800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:27907600-27926000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:27908000-27935000	Weak transcription	Primary T cells from cord blood	blood
5	chr7:27908200-27932600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr7:27909400-27937200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:27914000-27933000	Weak transcription	Aorta	Aorta
8	chr7:27914400-27937200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:27914600-27933000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:27915400-27939400	Weak transcription	NHDF-Ad	bronchial
11	chr7:27915800-27937200	Weak transcription	Gastric	stomach
12	chr7:27915800-27937200	Weak transcription	Right Ventricle	heart
13	chr7:27916600-27933400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:27921800-27927800	Strong transcription	Primary B cells from cord blood	blood
15	chr7:27922200-27933200	Weak transcription	Left Ventricle	heart
16	chr7:27922800-27937000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:27923400-27928200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr7:27923400-27933200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:27923600-27926000	Enhancers	HUVEC	blood vessel
20	chr7:27923800-27932400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:27923800-27932800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:27923800-27936800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:27923800-27941000	Weak transcription	Fetal Brain Female	brain
24	chr7:27924000-27927000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr7:27924000-27933000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:27924000-27933000	Weak transcription	Fetal Stomach	stomach
27	chr7:27924000-27937200	Weak transcription	Lung	lung
28	chr7:27924000-27938800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:27924000-27938800	Weak transcription	Spleen	Spleen
30	chr7:27924200-27932400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:27924200-27932600	Weak transcription	Fetal Muscle Leg	muscle
32	chr7:27924200-27932800	Weak transcription	Adipose Nuclei	Adipose
33	chr7:27924200-27933000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:27924200-27933600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:27924200-27936400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:27924200-27936600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr7:27925000-27925800	Enhancers	Liver	Liver
38	chr7:27925000-27926200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:27925200-27925800	Enhancers	Fetal Heart	heart
40	chr7:27925400-27925800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:27925400-27926600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:27925400-27932800	Weak transcription	Colon Smooth Muscle	Colon
43	chr7:27925600-27925800	Enhancers	Fetal Kidney	kidney
44	chr7:27925600-27929800	Weak transcription	Pancreas	Pancrea
45	chr7:27925600-27933200	Weak transcription	Stomach Smooth Muscle	stomach

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