Variant report

Variant	rs7789880
Chromosome Location	chr7:27917094-27917095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27572850..27575032-chr7:27915614..27917476,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10225163	0.86[YRI][hapmap]
rs10244184	0.85[GIH][hapmap];0.82[EUR][1000 genomes]
rs12700847	0.82[GIH][hapmap]
rs2107412	0.84[EUR][1000 genomes]
rs2158387	0.85[EUR][1000 genomes]
rs720659	0.84[CEU][hapmap];0.93[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs739898	0.89[GIH][hapmap]
rs9655275	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1018550	chr7:27844038-27925645	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7789880	FKBP14	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27906200-27933000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:27906600-27925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:27907000-27930800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:27907600-27926000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:27908000-27935000	Weak transcription	Primary T cells from cord blood	blood
6	chr7:27908200-27932600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:27908600-27917400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:27909400-27923600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:27909400-27923800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:27909400-27937200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:27911000-27923600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:27914000-27933000	Weak transcription	Aorta	Aorta
13	chr7:27914400-27922600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:27914400-27937200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:27914600-27921400	Weak transcription	Fetal Brain Male	brain
16	chr7:27914600-27922000	Weak transcription	Right Atrium	heart
17	chr7:27914600-27923400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:27914600-27923600	Weak transcription	Fetal Stomach	stomach
19	chr7:27914600-27933000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:27914800-27919200	Strong transcription	Primary B cells from cord blood	blood
21	chr7:27914800-27923200	Weak transcription	Fetal Heart	heart
22	chr7:27914800-27923400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:27914800-27923400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:27915000-27925000	Weak transcription	Liver	Liver
25	chr7:27915200-27923600	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:27915400-27939400	Weak transcription	NHDF-Ad	bronchial
27	chr7:27915800-27923400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr7:27915800-27937200	Weak transcription	Gastric	stomach
29	chr7:27915800-27937200	Weak transcription	Right Ventricle	heart
30	chr7:27916600-27918600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:27916600-27923200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:27916600-27933400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:27916800-27924800	Weak transcription	Pancreas	Pancrea

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