Variant report

Variant	rs9655275
Chromosome Location	chr7:27924602-27924603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27924120..27926440-chr7:27928203..27929824,2	K562	blood:
2	chr7:27910666..27913225-chr7:27921986..27924862,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10244184	0.84[EUR][1000 genomes]
rs2107412	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2158387	0.86[EUR][1000 genomes]
rs720659	0.88[EUR][1000 genomes]
rs7789880	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1018550	chr7:27844038-27925645	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27906200-27933000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:27906600-27925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:27907000-27930800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:27907600-27926000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:27908000-27935000	Weak transcription	Primary T cells from cord blood	blood
6	chr7:27908200-27932600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:27909400-27937200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:27914000-27933000	Weak transcription	Aorta	Aorta
9	chr7:27914400-27937200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:27914600-27933000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:27915000-27925000	Weak transcription	Liver	Liver
12	chr7:27915400-27939400	Weak transcription	NHDF-Ad	bronchial
13	chr7:27915800-27937200	Weak transcription	Gastric	stomach
14	chr7:27915800-27937200	Weak transcription	Right Ventricle	heart
15	chr7:27916600-27933400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:27916800-27924800	Weak transcription	Pancreas	Pancrea
17	chr7:27921200-27925000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:27921800-27927800	Strong transcription	Primary B cells from cord blood	blood
19	chr7:27922200-27933200	Weak transcription	Left Ventricle	heart
20	chr7:27922800-27924800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:27922800-27937000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:27923400-27928200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr7:27923400-27933200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:27923600-27926000	Enhancers	HUVEC	blood vessel
25	chr7:27923800-27932400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:27923800-27932800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:27923800-27936800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:27923800-27941000	Weak transcription	Fetal Brain Female	brain
29	chr7:27924000-27925200	Weak transcription	Fetal Heart	heart
30	chr7:27924000-27925200	Weak transcription	Fetal Lung	lung
31	chr7:27924000-27925400	Weak transcription	Fetal Kidney	kidney
32	chr7:27924000-27927000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr7:27924000-27933000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:27924000-27933000	Weak transcription	Fetal Stomach	stomach
35	chr7:27924000-27937200	Weak transcription	Lung	lung
36	chr7:27924000-27938800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:27924000-27938800	Weak transcription	Spleen	Spleen
38	chr7:27924200-27932400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:27924200-27932600	Weak transcription	Fetal Muscle Leg	muscle
40	chr7:27924200-27932800	Weak transcription	Adipose Nuclei	Adipose
41	chr7:27924200-27933000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:27924200-27933600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:27924200-27936400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:27924200-27936600	Weak transcription	H9 Cell Line	embryonic stem cell

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