Variant report

Variant	rs10225578
Chromosome Location	chr7:101269613-101269614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12539594	0.84[EUR][1000 genomes]
rs13236972	0.85[EUR][1000 genomes]
rs13245671	0.85[EUR][1000 genomes]
rs34279707	0.85[EUR][1000 genomes]
rs4602817	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv888826	chr7:101230768-101277334	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101258400-101274400	Weak transcription	Right Atrium	heart
2	chr7:101266400-101270000	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr7:101267200-101270000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:101267200-101270000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:101267200-101272000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr7:101267400-101270000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:101267400-101270000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:101267600-101270200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:101267800-101269800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:101268400-101269800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:101268400-101273800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:101268600-101270000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:101268600-101272000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:101268600-101272000	Weak transcription	HSMMtube	muscle
15	chr7:101268600-101272200	Weak transcription	HSMM	muscle
16	chr7:101268600-101273600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr7:101268800-101274000	Weak transcription	Osteobl	bone
18	chr7:101269000-101269800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:101269000-101269800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:101269400-101275000	Enhancers	Placenta	Placenta
21	chr7:101269600-101269800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
22	chr7:101269600-101270200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
23	chr7:101269600-101270200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr7:101269600-101273800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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