Variant report

Variant	rs13245671
Chromosome Location	chr7:101262637-101262638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101260930..101263826-chr7:101271438..101273640,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106436	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10225578	0.85[EUR][1000 genomes]
rs12532732	0.85[EUR][1000 genomes]
rs12539594	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13226908	0.86[EUR][1000 genomes]
rs13236972	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13239841	0.89[ASN][1000 genomes]
rs13241466	0.81[EUR][1000 genomes]
rs34279707	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4602817	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56126758	0.88[ASN][1000 genomes]
rs59746273	0.91[ASN][1000 genomes]
rs67390976	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv888826	chr7:101230768-101277334	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101257200-101262800	Enhancers	Placenta	Placenta
2	chr7:101258400-101274400	Weak transcription	Right Atrium	heart
3	chr7:101258600-101267600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:101258800-101266200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:101258800-101267800	Weak transcription	Spleen	Spleen
6	chr7:101258800-101268400	Weak transcription	Gastric	stomach
7	chr7:101260800-101262800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:101261200-101262800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:101261400-101262800	Enhancers	Fetal Muscle Leg	muscle
10	chr7:101261400-101262800	Enhancers	NHDF-Ad	bronchial
11	chr7:101261600-101262800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr7:101261600-101263000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:101261800-101262800	Enhancers	HSMM	muscle
14	chr7:101262000-101262800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:101262000-101262800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr7:101262200-101262800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:101262200-101262800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:101262200-101262800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:101262200-101262800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:101262200-101262800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:101262200-101265600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:101262400-101262800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:101262400-101262800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:101262600-101262800	Enhancers	HMEC	breast
25	chr7:101262600-101264600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:101262600-101265800	Weak transcription	HSMMtube	muscle

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