Variant report

Variant	rs59746273
Chromosome Location	chr7:101279076-101279077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101272795..101275451-chr7:101277536..101279709,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12539594	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13236972	1.00[ASN][1000 genomes]
rs13239841	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13245671	0.91[ASN][1000 genomes]
rs34279707	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4602817	0.90[ASN][1000 genomes]
rs56126758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67390976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs740203	0.82[EUR][1000 genomes]
rs9800906	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101270000-101279600	Enhancers	Fetal Muscle Leg	muscle
2	chr7:101272000-101279600	Enhancers	Fetal Muscle Trunk	muscle
3	chr7:101273800-101280200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:101276600-101281000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr7:101277400-101280000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:101277800-101280200	Weak transcription	HSMM	muscle
7	chr7:101278400-101279200	Enhancers	Psoas Muscle	Psoas
8	chr7:101278400-101281000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr7:101278800-101279200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:101278800-101279200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr7:101278800-101279200	Enhancers	Spleen	Spleen
12	chr7:101278800-101279200	Enhancers	HUVEC	blood vessel
13	chr7:101278800-101280400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:101278800-101280800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:101278800-101281000	Enhancers	HMEC	breast
16	chr7:101278800-101281200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:101279000-101279200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:101279000-101279200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:101279000-101279200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:101279000-101280600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr7:101279000-101280600	Enhancers	Esophagus	oesophagus
22	chr7:101279000-101281400	Enhancers	Placenta	Placenta

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