Variant report

Variant	rs13226908
Chromosome Location	chr7:101257776-101257777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101255927..101262461-chr7:101262750..101268268,7	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12532732	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12533518	0.96[ASN][1000 genomes]
rs12539594	0.83[EUR][1000 genomes]
rs12540150	0.99[ASN][1000 genomes]
rs13236972	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13245671	0.86[EUR][1000 genomes]
rs2108027	0.84[EUR][1000 genomes]
rs2240389	0.99[ASN][1000 genomes]
rs2240390	0.99[ASN][1000 genomes]
rs34279707	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4602817	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67986566	0.85[EUR][1000 genomes]
rs6949105	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv888826	chr7:101230768-101277334	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101252600-101257800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:101252800-101257800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:101252800-101257800	Weak transcription	HMEC	breast
4	chr7:101252800-101258000	Weak transcription	Right Atrium	heart
5	chr7:101252800-101260800	Weak transcription	Esophagus	oesophagus
6	chr7:101256200-101258600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:101256200-101258800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:101256200-101258800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:101256200-101258800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:101256200-101259000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:101256200-101259400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:101256200-101259600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr7:101256200-101259600	Enhancers	Fetal Muscle Leg	muscle
14	chr7:101256400-101258800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:101256400-101258800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:101256600-101258200	Weak transcription	Gastric	stomach
17	chr7:101256800-101257800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:101256800-101257800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:101256800-101257800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:101256800-101258400	Weak transcription	Ovary	ovary
21	chr7:101256800-101258600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:101257000-101258000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:101257000-101258000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr7:101257000-101258200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:101257200-101258200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:101257200-101262800	Enhancers	Placenta	Placenta
27	chr7:101257400-101258000	Enhancers	Fetal Thymus	thymus
28	chr7:101257400-101259000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:101257600-101257800	Enhancers	HSMMtube	muscle
30	chr7:101257600-101258000	Weak transcription	Aorta	Aorta
31	chr7:101257600-101258200	Enhancers	HSMM	muscle
32	chr7:101257600-101258400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr7:101257600-101258600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr7:101257600-101258800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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