Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1019030	0.94[ASN][1000 genomes]
rs10216048	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1029590	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029591	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10428922	0.94[ASN][1000 genomes]
rs12673561	0.83[ASN][1000 genomes]
rs12701861	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12701862	0.94[ASN][1000 genomes]
rs1988639	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2018250	0.84[AFR][1000 genomes]
rs2108186	0.91[ASN][1000 genomes]
rs2190346	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2329912	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4724023	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4724024	0.94[ASN][1000 genomes]
rs4724025	0.83[ASN][1000 genomes]
rs6463003	0.91[ASN][1000 genomes]
rs6945025	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6962170	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6962276	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs714890	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41123000-41132400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:41128800-41136000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:41129200-41175200	Weak transcription	Aorta	Aorta

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