Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41109428..41111588-chr7:41112880..41114571,2	MCF-7	breast:
2	chr7:41103342..41106054-chr7:41112396..41114390,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1019030	0.96[ASN][1000 genomes]
rs10216048	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10226994	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029591	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10428922	0.96[ASN][1000 genomes]
rs12673561	0.85[ASN][1000 genomes]
rs12701861	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12701862	0.96[ASN][1000 genomes]
rs1988639	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2018250	0.82[ASN][1000 genomes]
rs2108186	0.94[ASN][1000 genomes]
rs2190346	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329912	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4724023	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4724024	0.91[ASN][1000 genomes]
rs4724025	0.81[ASN][1000 genomes]
rs6463003	0.94[ASN][1000 genomes]
rs6945025	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6962170	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6962276	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs714890	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41101000-41117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:41112000-41127800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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