Variant report
| Variant | rs10228053 |
|---|---|
| Chromosome Location | chr7:14444010-14444011 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10243451 | 0.81[YRI][hapmap] |
| rs10950522 | 0.86[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs12111648 | 0.84[EUR][1000 genomes] |
| rs12532234 | 0.82[EUR][1000 genomes] |
| rs12532527 | 0.80[YRI][hapmap] |
| rs12535183 | 0.82[YRI][hapmap] |
| rs12535778 | 0.86[EUR][1000 genomes] |
| rs12536559 | 0.95[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12536670 | 0.80[CEU][hapmap] |
| rs13232324 | 0.86[EUR][1000 genomes] |
| rs13233368 | 0.88[EUR][1000 genomes] |
| rs1367777 | 0.95[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1367778 | 0.81[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs1431534 | 0.80[CEU][hapmap] |
| rs1431535 | 0.84[EUR][1000 genomes] |
| rs1431536 | 0.86[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs1560575 | 0.81[YRI][hapmap] |
| rs1560576 | 0.80[CHB][hapmap] |
| rs196756 | 0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2067698 | 0.81[EUR][1000 genomes] |
| rs34628921 | 0.95[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs34886902 | 0.88[EUR][1000 genomes] |
| rs35182111 | 0.88[EUR][1000 genomes] |
| rs35469417 | 0.88[EUR][1000 genomes] |
| rs35690340 | 0.87[EUR][1000 genomes] |
| rs36198503 | 0.89[EUR][1000 genomes] |
| rs58641244 | 0.88[EUR][1000 genomes] |
| rs6962080 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6962861 | 0.85[CEU][hapmap];0.85[YRI][hapmap] |
| rs73068025 | 0.87[EUR][1000 genomes] |
| rs73068026 | 0.87[EUR][1000 genomes] |
| rs73068027 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
