Variant report

Variant	rs10228687
Chromosome Location	chr7:140122027-140122028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10277843	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140104200-140125800	Weak transcription	Right Atrium	heart
2	chr7:140104200-140133400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:140104600-140127800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:140104800-140125600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:140104800-140125600	Weak transcription	Gastric	stomach
6	chr7:140104800-140125800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:140104800-140126000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:140104800-140126000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:140104800-140128200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:140104800-140129000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:140105000-140126600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:140105000-140128200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:140105000-140132400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:140113200-140125800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:140113800-140128200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:140114000-140125600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr7:140114000-140127400	Weak transcription	Fetal Intestine Small	intestine
18	chr7:140114600-140125800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:140114600-140125800	Weak transcription	Spleen	Spleen
20	chr7:140114800-140125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:140115400-140125000	Weak transcription	Primary T cells from cord blood	blood
22	chr7:140117600-140125800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:140117600-140126000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:140117800-140125800	Weak transcription	Pancreas	Pancrea
25	chr7:140117800-140126600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:140117800-140129600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:140117800-140130600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr7:140118000-140127800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr7:140118000-140129600	Weak transcription	Colonic Mucosa	Colon
30	chr7:140121800-140122600	Strong transcription	Primary neutrophils fromperipheralblood	blood

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