Variant report

Variant	rs10277843
Chromosome Location	chr7:140129404-140129405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10227027	1.00[AMR][1000 genomes]
rs10228687	0.84[AFR][1000 genomes]
rs28573207	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967008	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140104200-140133400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:140105000-140132400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:140117800-140129600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:140117800-140130600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:140118000-140129600	Weak transcription	Colonic Mucosa	Colon
6	chr7:140126400-140129800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:140126400-140135200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
9	chr7:140126600-140129600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:140126600-140129600	Weak transcription	Fetal Intestine Large	intestine
11	chr7:140126600-140130800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:140126600-140132800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:140126600-140134000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:140126600-140135000	Weak transcription	Pancreas	Pancrea
15	chr7:140126600-140135600	Weak transcription	Gastric	stomach
16	chr7:140126600-140148000	Weak transcription	Primary T cells from cord blood	blood
17	chr7:140126800-140131400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:140128200-140132200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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