Variant report

Variant	rs10229818
Chromosome Location	chr7:147301994-147301995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11975483	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11975946	0.84[CEU][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap]
rs11982531	0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62481356	0.81[EUR][1000 genomes]
rs62481357	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62481358	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62483160	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62483176	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62483177	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62483178	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62483179	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62483183	0.82[EUR][1000 genomes]
rs7781428	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7787323	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7794693	0.90[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs7797373	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809521	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10229818	ZNF767	cis	parietal	SCAN
rs10229818	OR2F2	cis	cerebellum	SCAN
rs10229818	ABP1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147298000-147307600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147299200-147302000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:147299400-147302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:147299400-147302200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:147301600-147302600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:147301600-147302800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:147301600-147303000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:147301600-147304400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:147301800-147302400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:147301800-147302600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:147301800-147302600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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