Variant report

Variant	rs7787323
Chromosome Location	chr7:147299718-147299719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10229818	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11975483	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11982531	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62481357	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62481358	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62483160	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62483176	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62483177	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62483178	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62483179	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62483183	0.80[EUR][1000 genomes]
rs7781428	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794693	0.83[ASN][1000 genomes]
rs7797373	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7809521	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147297400-147301600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:147298000-147307600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:147298400-147301600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:147299200-147301600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:147299200-147301600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:147299200-147302000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:147299400-147301800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:147299400-147302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:147299400-147302200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links