Variant report

Variant	rs10230291
Chromosome Location	chr7:103591822-103591823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10245730	0.89[CEU][hapmap]
rs10261497	0.89[CEU][hapmap]
rs10269319	0.89[CEU][hapmap];0.90[CHB][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12666126	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12666162	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12666169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12666713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12666749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12671050	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7794238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7794418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs961206	0.90[CEU][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10230291	PRKAR2B	cis	parietal	SCAN
rs10230291	HBP1	cis	cerebellum	SCAN
rs10230291	ZNF3	cis	cerebellum	SCAN
rs10230291	VGF	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103584800-103596800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:103585400-103596000	Weak transcription	HepG2	liver
3	chr7:103590600-103597200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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