Variant report

Variant	rs1023036
Chromosome Location	chr6:36914173-36914174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1150786	0.87[CHB][hapmap]
rs1405070	0.82[EUR][1000 genomes]
rs1543273	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543274	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1571397	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1724103	0.81[AMR][1000 genomes]
rs1887763	0.88[ASN][1000 genomes]
rs2296934	0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs4711475	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4714025	0.82[JPT][hapmap]
rs697746	0.81[EUR][1000 genomes]
rs707542	0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs708000	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9368976	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
2	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
6	chr6:36908000-36915200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:36910800-36916000	Weak transcription	Hela-S3	cervix
8	chr6:36912600-36915000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:36912600-36915400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:36912800-36914600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:36912800-36915200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:36913200-36917000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:36913800-36916000	Enhancers	Fetal Thymus	thymus
14	chr6:36914000-36915400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:36914000-36915800	Enhancers	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links