Variant report

Variant	rs1887763
Chromosome Location	chr6:36912503-36912504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1023036	0.88[ASN][1000 genomes]
rs1543273	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1543274	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711475	0.82[ASN][1000 genomes]
rs4714025	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
2	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
6	chr6:36908000-36915200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:36908800-36914000	Weak transcription	Thymus	Thymus
8	chr6:36910800-36916000	Weak transcription	Hela-S3	cervix
9	chr6:36911200-36912600	Enhancers	Primary B cells from cord blood	blood
10	chr6:36911400-36912800	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:36912000-36912600	Enhancers	Fetal Thymus	thymus
12	chr6:36912000-36913200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:36912200-36912600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:36912200-36912800	Enhancers	Brain Anterior Caudate	brain
15	chr6:36912200-36912800	Enhancers	Fetal Heart	heart
16	chr6:36912400-36912600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:36912400-36912600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:36912400-36912600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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