Variant report

Variant	rs10231651
Chromosome Location	chr7:18829788-18829789
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10215908	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10234468	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10234685	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10245511	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10248070	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10248443	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10258269	0.82[CHB][hapmap]
rs10261308	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10281362	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2519739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3852251	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7777331	0.82[CHB][hapmap]
rs7798646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9655161	0.82[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18790600-18835000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18818600-18832200	Weak transcription	Osteobl	bone
3	chr7:18818800-18832400	Weak transcription	HSMMtube	muscle
4	chr7:18827800-18832400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:18828000-18832400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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