Variant report
Variant | rs7777331 |
---|---|
Chromosome Location | chr7:18848387-18848388 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | STAT3 | chr7:18848288-18848470 | MCF10A-Er-Src | breast: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
RN7SKP266 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10215908 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs10231651 | 0.82[CHB][hapmap] |
rs10234468 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
rs10248070 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
rs10258269 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10261308 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs10281362 | 1.00[CHB][hapmap];0.91[ASN][1000 genomes] |
rs2519739 | 1.00[JPT][hapmap] |
rs28811631 | 0.94[ASN][1000 genomes] |
rs3852251 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs3852252 | 0.94[ASN][1000 genomes] |
rs56036745 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7790376 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7798646 | 1.00[JPT][hapmap] |
rs9655161 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv498112 | chr7:18677922-18991946 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv887813 | chr7:18720135-18995552 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv887814 | chr7:18751998-18886177 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:18844000-18858000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |