Variant report

Variant	rs10231690
Chromosome Location	chr7:120403584-120403585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10239799	0.82[EUR][1000 genomes]
rs12155429	0.87[EUR][1000 genomes]
rs41619	0.81[ASN][1000 genomes]
rs4281065	0.87[EUR][1000 genomes]
rs4463360	0.88[EUR][1000 genomes]
rs6962226	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968447	0.82[EUR][1000 genomes]
rs6978494	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425852	0.88[EUR][1000 genomes]
rs73425856	0.87[EUR][1000 genomes]
rs73425858	0.81[EUR][1000 genomes]
rs73425863	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10231690	TSPAN12	cis	Artery Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120401600-120407000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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