Variant report

Variant	rs41619
Chromosome Location	chr7:120422796-120422797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10231690	0.81[ASN][1000 genomes]
rs10266755	0.83[EUR][1000 genomes]
rs114420	0.84[EUR][1000 genomes]
rs12154976	0.85[EUR][1000 genomes]
rs13231854	0.82[EUR][1000 genomes]
rs2107275	0.81[EUR][1000 genomes]
rs2189974	0.84[EUR][1000 genomes]
rs3735467	0.81[EUR][1000 genomes]
rs3823861	0.85[EUR][1000 genomes]
rs41611	0.85[EUR][1000 genomes]
rs41612	0.84[EUR][1000 genomes]
rs41613	0.87[EUR][1000 genomes]
rs41616	0.87[EUR][1000 genomes]
rs41617	0.89[EUR][1000 genomes]
rs41618	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs41620	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41621	0.93[EUR][1000 genomes]
rs41622	0.84[EUR][1000 genomes]
rs41623	0.86[EUR][1000 genomes]
rs41624	0.93[EUR][1000 genomes]
rs41626	0.86[EUR][1000 genomes]
rs41627	0.91[EUR][1000 genomes]
rs41628	0.93[EUR][1000 genomes]
rs41629	0.91[EUR][1000 genomes]
rs41632	0.85[EUR][1000 genomes]
rs42333	0.85[EUR][1000 genomes]
rs6962226	0.83[ASN][1000 genomes]
rs6978494	0.81[ASN][1000 genomes]
rs73425863	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41619	TSPAN12	cis	Artery Tibial	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120416400-120424800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:120418200-120423400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120418600-120423000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:120419800-120423800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:120421600-120423000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:120422600-120422800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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