Variant report

Variant	rs41612
Chromosome Location	chr7:120417779-120417780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs114420	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12154976	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2189974	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41613	0.96[EUR][1000 genomes]
rs41614	0.84[EUR][1000 genomes]
rs41616	0.95[EUR][1000 genomes]
rs41617	0.94[EUR][1000 genomes]
rs41619	0.84[EUR][1000 genomes]
rs41620	0.82[EUR][1000 genomes]
rs41622	0.91[EUR][1000 genomes]
rs41623	0.94[EUR][1000 genomes]
rs41626	0.94[EUR][1000 genomes]
rs42333	0.93[EUR][1000 genomes]
rs4730982	0.83[EUR][1000 genomes]
rs73721472	0.82[ASN][1000 genomes]
rs7805733	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120414800-120421200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120416400-120424800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:120417400-120418600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:120417600-120418200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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