Variant report

Variant	rs7805733
Chromosome Location	chr7:120450658-120450659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120445313..120447921-chr7:120448553..120451279,2	K562	blood:
2	chr7:120450263..120451894-chr7:120453543..120455198,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10225453	0.81[CEU][hapmap]
rs10266755	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs114420	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11976580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs12154976	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs12673417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13231854	0.80[EUR][1000 genomes]
rs17132731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs17142976	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142995	0.84[CEU][hapmap]
rs17143013	0.93[ASN][1000 genomes]
rs2107275	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs2189974	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2525706	0.81[ASN][1000 genomes]
rs2525710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2721329	0.81[ASN][1000 genomes]
rs2721330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2721332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2721344	0.93[ASN][1000 genomes]
rs2721346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2721348	0.93[ASN][1000 genomes]
rs2721360	0.93[ASN][1000 genomes]
rs2721371	0.93[ASN][1000 genomes]
rs3735467	0.82[EUR][1000 genomes]
rs3823859	0.81[CEU][hapmap]
rs3823861	0.86[CEU][hapmap]
rs41612	0.80[EUR][1000 genomes]
rs41613	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41616	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41617	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41622	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41623	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41624	0.86[CEU][hapmap]
rs41626	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41629	0.95[CEU][hapmap]
rs41632	0.86[CEU][hapmap]
rs42333	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730982	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55733320	1.00[ASN][1000 genomes]
rs55749650	0.88[ASN][1000 genomes]
rs56023697	0.93[ASN][1000 genomes]
rs56067931	1.00[ASN][1000 genomes]
rs61481874	0.93[ASN][1000 genomes]
rs6466759	0.81[CEU][hapmap]
rs6466760	0.81[CEU][hapmap]
rs6466761	0.81[CEU][hapmap]
rs6466762	0.81[CEU][hapmap]
rs67679138	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959328	0.81[CEU][hapmap]
rs73427871	0.93[ASN][1000 genomes]
rs73427873	0.93[ASN][1000 genomes]
rs73427878	0.93[ASN][1000 genomes]
rs73721472	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7810542	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs886440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7805733	TSPAN12	cis	Artery Tibial	GTEx

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120425600-120470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:120425800-120454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:120427400-120466000	Weak transcription	Fetal Stomach	stomach
4	chr7:120430400-120468200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:120432600-120453800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:120432600-120455400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:120432600-120468400	Weak transcription	Lung	lung
8	chr7:120439200-120457800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:120439400-120469200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:120441200-120452600	Weak transcription	Fetal Intestine Small	intestine
11	chr7:120442600-120457400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:120443000-120488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:120444000-120457400	Weak transcription	Adipose Nuclei	Adipose
14	chr7:120445200-120494400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:120446000-120476200	Weak transcription	Left Ventricle	heart
16	chr7:120446400-120457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:120446800-120462200	Weak transcription	GM12878-XiMat	blood
18	chr7:120447000-120451600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:120447400-120471400	Weak transcription	Fetal Kidney	kidney
20	chr7:120447800-120453600	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:120447800-120465600	Weak transcription	Liver	Liver
22	chr7:120448400-120457400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:120449000-120451200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:120449200-120450800	Enhancers	Fetal Heart	heart
25	chr7:120449400-120451200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr7:120449600-120451200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr7:120449600-120452600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:120449800-120451400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:120449800-120457600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:120449800-120476000	Weak transcription	HUVEC	blood vessel
31	chr7:120450000-120453800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr7:120450600-120454200	Weak transcription	Fetal Intestine Large	intestine
33	chr7:120450600-120454800	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:120450600-120470400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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