Variant report

Variant	rs61481874
Chromosome Location	chr7:120511793-120511794
allele	-/GCACACACACACAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120510074..120512878-chr7:120587345..120588898,2	K562	blood:
2	chr7:120507573..120510095-chr7:120511192..120513346,3	K562	blood:
3	chr7:120510182..120513109-chr7:120515595..120517982,2	K562	blood:
4	chr7:120504448..120506162-chr7:120510454..120511972,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs114420	0.86[ASN][1000 genomes]
rs11976580	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12673417	0.93[ASN][1000 genomes]
rs17132731	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142976	0.93[ASN][1000 genomes]
rs17143013	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189974	0.86[ASN][1000 genomes]
rs2525706	0.87[ASN][1000 genomes]
rs2525710	0.87[ASN][1000 genomes]
rs2721329	0.87[ASN][1000 genomes]
rs2721330	0.87[ASN][1000 genomes]
rs2721332	1.00[ASN][1000 genomes]
rs2721344	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2721346	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2721348	1.00[ASN][1000 genomes]
rs2721360	1.00[ASN][1000 genomes]
rs2721371	1.00[ASN][1000 genomes]
rs41613	0.93[ASN][1000 genomes]
rs41616	0.93[ASN][1000 genomes]
rs41617	0.93[ASN][1000 genomes]
rs41622	0.93[ASN][1000 genomes]
rs41623	0.93[ASN][1000 genomes]
rs41626	0.93[ASN][1000 genomes]
rs42333	0.93[ASN][1000 genomes]
rs4730982	0.93[ASN][1000 genomes]
rs55733320	0.93[ASN][1000 genomes]
rs55749650	0.82[ASN][1000 genomes]
rs56023697	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56067931	0.93[ASN][1000 genomes]
rs67679138	0.93[ASN][1000 genomes]
rs73427871	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427873	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427878	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721472	0.87[ASN][1000 genomes]
rs7805733	0.93[ASN][1000 genomes]
rs7810542	0.93[ASN][1000 genomes]
rs886440	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv5929	chr7:120467591-120513472	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120508600-120518200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:120511400-120512000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:120511600-120511800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:120511600-120512200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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