Variant report

Variant	rs10231846
Chromosome Location	chr7:84918716-84918717
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84914222..84917543-chr7:84917652..84920035,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10228775	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10242267	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251098	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252813	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764041	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11765225	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11771648	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771887	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569113	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159762	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159779	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17159780	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17224427	0.92[ASN][1000 genomes]
rs17224891	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17225031	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17316336	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17316553	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17316749	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178114	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191487	0.92[ASN][1000 genomes]
rs4370460	0.92[ASN][1000 genomes]
rs4534076	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55723318	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55799824	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55990771	0.87[ASN][1000 genomes]
rs56238135	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56246930	0.92[ASN][1000 genomes]
rs56259432	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56294416	0.85[ASN][1000 genomes]
rs60667671	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60740511	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60932498	0.92[ASN][1000 genomes]
rs61139517	0.94[ASN][1000 genomes]
rs62459875	0.92[ASN][1000 genomes]
rs62459876	0.92[ASN][1000 genomes]
rs6943442	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943449	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73192493	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194304	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194309	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194323	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73194344	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194348	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194392	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73194394	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73194396	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73194399	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73196338	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73196344	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73196348	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73198210	0.87[ASN][1000 genomes]
rs7806720	0.92[ASN][1000 genomes]
rs7808114	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1017834	chr7:84832489-85083958	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538996	chr7:84832489-85083958	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv888647	chr7:84866308-85091003	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84917000-84918800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:84917000-84919600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:84918000-84920200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:84918000-84920800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:84918200-84919000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:84918200-84919200	Enhancers	HepG2	liver
7	chr7:84918200-84919800	Enhancers	Primary B cells from cord blood	blood
8	chr7:84918200-84920000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:84918200-84920000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:84918200-84920200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:84918200-84920200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:84918200-84924400	Enhancers	Primary B cells from peripheral blood	blood
13	chr7:84918400-84919000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:84918400-84920200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:84918400-84920200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links