Variant report

Variant	rs73196338
Chromosome Location	chr7:84971372-84971373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10228775	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10231846	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10242267	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10251098	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10252813	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11764041	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11765225	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11771648	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11771887	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1569113	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17159762	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17159779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17159780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17224891	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17225031	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17316336	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17316553	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17316749	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2178114	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4534076	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55723318	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55799824	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55990771	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56238135	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56259432	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56294416	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60667671	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60740511	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6943442	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6943449	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73192493	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73194304	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73194309	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73194323	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73194344	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73194348	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73194392	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73194394	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73194396	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73194399	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73196344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73196348	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73198210	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808114	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1017834	chr7:84832489-85083958	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538996	chr7:84832489-85083958	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv888647	chr7:84866308-85091003	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84970200-84971600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:84970600-84971600	Enhancers	HUES48 Cell Line	embryonic stem cell

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