Variant report

Variant	rs10231863
Chromosome Location	chr7:66632178-66632179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10155890	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10155918	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10155972	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10155983	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10156209	0.81[AMR][1000 genomes]
rs10231586	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10235588	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10243217	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10246747	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10247133	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10250113	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10250487	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10251763	0.81[EUR][1000 genomes]
rs10252143	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10256139	0.81[EUR][1000 genomes]
rs10257949	0.81[AMR][1000 genomes]
rs10262150	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10267300	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10272347	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10272591	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10280699	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11764376	0.80[EUR][1000 genomes]
rs12154409	0.83[AMR][1000 genomes]
rs12154419	0.83[AMR][1000 genomes]
rs12155044	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12155051	0.83[AMR][1000 genomes]
rs1815098	0.83[AMR][1000 genomes]
rs2421419	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28366417	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2844157	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28534521	0.81[AMR][1000 genomes]
rs28651697	0.83[AMR][1000 genomes]
rs28715521	0.81[AMR][1000 genomes]
rs3015884	0.82[EUR][1000 genomes]
rs3107871	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34145691	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34317556	0.82[AMR][1000 genomes]
rs34344363	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34654147	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35048638	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36108108	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3962076	0.85[EUR][1000 genomes]
rs3980767	0.83[EUR][1000 genomes]
rs4101640	0.82[EUR][1000 genomes]
rs4295533	0.83[EUR][1000 genomes]
rs4551224	0.83[EUR][1000 genomes]
rs4552791	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4559131	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4618581	0.82[EUR][1000 genomes]
rs4717353	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4718463	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4718464	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4718469	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4718470	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4718471	0.80[EUR][1000 genomes]
rs67855845	0.83[EUR][1000 genomes]
rs71535637	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71535638	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71563180	0.82[EUR][1000 genomes]
rs73140602	0.83[EUR][1000 genomes]
rs73142604	0.83[EUR][1000 genomes]
rs7804802	0.82[AMR][1000 genomes]
rs9654771	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9654851	0.80[EUR][1000 genomes]
rs9654853	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9654854	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	esv1802655	chr7:66576034-66634666	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	esv1816643	chr7:66576034-66634666	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	esv1840497	chr7:66576034-66634666	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	esv1851064	chr7:66576034-66634666	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	esv1850306	chr7:66601324-66632583	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv1832033	chr7:66601324-66637001	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv1822512	chr7:66613751-66637001	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv1826252	chr7:66613751-66637001	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv1810114	chr7:66621964-66636410	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
14	esv2422035	chr7:66621964-66676630	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv1800770	chr7:66629329-66645232	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1831418	chr7:66629329-66645232	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1831706	chr7:66629329-66645232	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv441983	chr7:66629329-66645232	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10231863	TYW1	cis	Esophagus Mucosa	GTEx
rs10231863	TYW1	cis	Muscle Skeletal	GTEx
rs10231863	TYW1	cis	Heart Left Ventricle	GTEx
rs10231863	TYW1	cis	Nerve Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66608800-66632600	Weak transcription	Ovary	ovary
2	chr7:66621600-66672000	Weak transcription	Fetal Intestine Large	intestine
3	chr7:66628600-66684600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:66629000-66650200	Weak transcription	Fetal Thymus	thymus

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