Variant report

Variant	rs71563180
Chromosome Location	chr7:66641627-66641628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs10081276	0.84[EUR][1000 genomes]
rs10081302	0.83[EUR][1000 genomes]
rs10081331	0.84[EUR][1000 genomes]
rs10081333	0.84[EUR][1000 genomes]
rs10081344	0.84[EUR][1000 genomes]
rs10155890	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10155918	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10155972	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10155983	0.88[EUR][1000 genomes]
rs10156209	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10229408	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10230059	0.81[EUR][1000 genomes]
rs10231586	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10231863	0.82[EUR][1000 genomes]
rs10232876	0.83[EUR][1000 genomes]
rs10233388	0.82[EUR][1000 genomes]
rs10233507	0.83[EUR][1000 genomes]
rs10235588	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10243217	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10243421	0.83[EUR][1000 genomes]
rs10246747	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10247133	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10247272	0.84[EUR][1000 genomes]
rs10250113	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10250487	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10251763	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10252143	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10253339	0.86[EUR][1000 genomes]
rs10254788	0.83[EUR][1000 genomes]
rs10256139	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10257949	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10258678	0.81[EUR][1000 genomes]
rs10262150	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10267300	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10267317	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10270292	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10272347	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10272591	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10273692	0.83[EUR][1000 genomes]
rs10277509	0.81[EUR][1000 genomes]
rs10280559	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10280699	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10950062	0.84[EUR][1000 genomes]
rs10950064	0.84[EUR][1000 genomes]
rs11760347	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11761100	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11761936	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11764376	0.88[EUR][1000 genomes]
rs11772455	0.87[EUR][1000 genomes]
rs11773274	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11773730	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11976638	0.84[EUR][1000 genomes]
rs12154409	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12154419	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12154688	0.81[EUR][1000 genomes]
rs12155044	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12155051	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12155330	0.84[EUR][1000 genomes]
rs13244997	0.84[EUR][1000 genomes]
rs1581502	0.81[EUR][1000 genomes]
rs17139656	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1815098	0.86[EUR][1000 genomes]
rs1815101	0.81[EUR][1000 genomes]
rs2019826	0.81[EUR][1000 genomes]
rs2421393	0.82[EUR][1000 genomes]
rs2421398	0.86[EUR][1000 genomes]
rs2421404	0.85[EUR][1000 genomes]
rs2421405	0.85[EUR][1000 genomes]
rs2421419	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2421425	0.82[EUR][1000 genomes]
rs2461607	0.81[AFR][1000 genomes]
rs2690170	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28366417	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2844157	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28497071	0.81[EUR][1000 genomes]
rs28534521	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28556313	0.81[EUR][1000 genomes]
rs28651697	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28715521	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28806258	0.83[EUR][1000 genomes]
rs28808071	0.84[EUR][1000 genomes]
rs28860910	0.84[EUR][1000 genomes]
rs2901424	0.83[EUR][1000 genomes]
rs2949109	0.82[EUR][1000 genomes]
rs3015884	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3107871	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34145691	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34146912	0.81[EUR][1000 genomes]
rs34176733	0.84[EUR][1000 genomes]
rs34317556	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34344363	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34463275	0.84[EUR][1000 genomes]
rs34566330	0.81[EUR][1000 genomes]
rs34567129	0.83[EUR][1000 genomes]
rs34654147	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35048638	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35064061	0.84[EUR][1000 genomes]
rs35120837	0.83[EUR][1000 genomes]
rs35290283	0.81[EUR][1000 genomes]
rs35336066	0.84[EUR][1000 genomes]
rs35387955	0.84[EUR][1000 genomes]
rs35399585	0.81[EUR][1000 genomes]
rs35599428	0.81[EUR][1000 genomes]
rs35649461	0.81[EUR][1000 genomes]
rs35669114	0.81[EUR][1000 genomes]
rs35877378	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35918453	0.84[EUR][1000 genomes]
rs35970624	0.84[EUR][1000 genomes]
rs36108108	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3897072	0.81[EUR][1000 genomes]
rs3962076	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3980767	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3980775	0.84[EUR][1000 genomes]
rs3980790	0.83[EUR][1000 genomes]
rs4101640	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4103731	0.82[EUR][1000 genomes]
rs4145350	0.86[EUR][1000 genomes]
rs4295533	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4383874	0.81[EUR][1000 genomes]
rs4433024	0.83[EUR][1000 genomes]
rs4486076	0.81[EUR][1000 genomes]
rs4496851	0.81[EUR][1000 genomes]
rs4504527	0.81[EUR][1000 genomes]
rs4524666	0.81[EUR][1000 genomes]
rs4535609	0.81[EUR][1000 genomes]
rs4551224	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4552791	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4559131	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4618581	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4621684	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717353	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717354	0.83[EUR][1000 genomes]
rs4718463	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4718464	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4718469	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4718470	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4718471	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4718475	0.84[EUR][1000 genomes]
rs4718477	0.84[EUR][1000 genomes]
rs4718478	0.81[EUR][1000 genomes]
rs55756354	0.86[EUR][1000 genomes]
rs56001319	0.84[EUR][1000 genomes]
rs61061833	0.83[EUR][1000 genomes]
rs6460333	0.81[EUR][1000 genomes]
rs66734104	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66806481	0.81[EUR][1000 genomes]
rs66954241	0.81[EUR][1000 genomes]
rs67650940	0.81[EUR][1000 genomes]
rs67855845	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67890875	0.81[EUR][1000 genomes]
rs6942913	0.81[EUR][1000 genomes]
rs6943439	0.81[EUR][1000 genomes]
rs6947488	0.84[EUR][1000 genomes]
rs6948588	0.80[EUR][1000 genomes]
rs6949429	0.84[EUR][1000 genomes]
rs6951468	0.81[EUR][1000 genomes]
rs6954642	0.81[EUR][1000 genomes]
rs6961084	0.81[EUR][1000 genomes]
rs6963793	0.83[EUR][1000 genomes]
rs6964179	0.82[EUR][1000 genomes]
rs6967381	0.84[EUR][1000 genomes]
rs6967876	0.84[EUR][1000 genomes]
rs71535637	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71535638	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71563178	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73140602	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73142604	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73142680	0.81[EUR][1000 genomes]
rs7779069	0.81[EUR][1000 genomes]
rs7780700	0.83[EUR][1000 genomes]
rs7781804	0.83[EUR][1000 genomes]
rs7792907	0.81[EUR][1000 genomes]
rs7804802	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7811233	0.81[EUR][1000 genomes]
rs9654771	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9654851	0.86[EUR][1000 genomes]
rs9654853	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9654854	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9769387	0.81[EUR][1000 genomes]
rs9886204	0.81[EUR][1000 genomes]
rs9886206	0.83[EUR][1000 genomes]
rs9886263	0.84[EUR][1000 genomes]
rs9886290	0.83[EUR][1000 genomes]
rs9886306	0.83[EUR][1000 genomes]
rs9886326	0.83[EUR][1000 genomes]
rs9986784	0.81[EUR][1000 genomes]
rs9986995	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	esv2422035	chr7:66621964-66676630	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1800770	chr7:66629329-66645232	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1831418	chr7:66629329-66645232	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1831706	chr7:66629329-66645232	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv441983	chr7:66629329-66645232	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs71563180	TYW1	cis	Muscle Skeletal	GTEx
rs71563180	TYW1	cis	Esophagus Mucosa	GTEx
rs71563180	TYW1	cis	Nerve Tibial	GTEx
rs71563180	GS1-124K5.4	cis	Nerve Tibial	GTEx
rs71563180	TYW1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66621600-66672000	Weak transcription	Fetal Intestine Large	intestine
2	chr7:66628600-66684600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:66629000-66650200	Weak transcription	Fetal Thymus	thymus
4	chr7:66640600-66677200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:66641600-66641800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links